MmuINT0110564 @ mm9
Intron Retention
Gene
ENSMUSG00000026398 | Nr5a2
Description
nuclear receptor subfamily 5, group A, member 2 [Source:MGI Symbol;Acc:MGI:1346834]
Coordinates
chr1:138845299-138848741:-
Coord C1 exon
chr1:138848679-138848741
Coord A exon
chr1:138845437-138848678
Coord C2 exon
chr1:138845299-138845436
Length
3242 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
TCTCTGCTGCCCGTGTCCAGGTG
3' ss Score
10.34
Exon sequences
Seq C1 exon
CGTCTGCACCAGGGTCAGAGACTCGCCACTCCCCCAAACGTGAGGAACAACTCCGGGAAAAAC
Seq A exon
GTGAGTGTGCCCTTGAATTTCCAACAAAACCCAGCTCCTTGAATCCGCCCTCCCCCCCCCCCCGCGCGCCCCCAAGCCCTACTGAGATATTGTCAAGAACCTGGAAATCTGAAAAAGGCCGATCTGAGTTACCTTGTCTCATTCTGGAGGTGGGAGTCAGGTTTTTCTAGGAAAAGCTCAGCCTCCCTCCCCTCTCCCTTCCCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGACAGAGAGACAGAGAGACAGAGAGACAGAGACAGAGAGACTCACTATGCCACACTGGTTGTCCCTTACTAACTATAGAGACCTTACATAGACCTTGTTGGAATCTTAAACTCAGAGAGATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGGCAGGCACTACACCTGGCAAAAAAGGCAACTTCTCTTGTTTGTTAGATCTCTCTAGCAGGCCCCTTCATTGGCTGCTAGACAGAGGCTCTGCCTAGACTAGATCTTCAAAGCAAGGAAAAGCTACTTAAATGTCAAAGGCCAGATTCTTTTAGACCTTGTCTTGGACACCTATTCCCTGTCTGCCCCTCCCTCCTCATCTACTAGGCGTTTTCTTGGAAAGTCTACCTGTGGGAAGATAAAGGAAAGCCCCACTTGACCTTTGGCATACACCGCTCTGGCTTTGGAAGACAAGCTGGGGGTGGGGGGCAGATGGGGCTGCAAAGCCACTAATTTGACCTAAGTATGTCCTTTCTGGGATAGAAGCTGGTGCTACCACAAAGTTCACCACACTGGGTCAGCTTCAGCCTCTGGTTTTGGCCAGCCTTCTAGCCACTGTAAATCACGAGGCTCTTCAACTTTGGGAGCCACCTCTTGAACAAAAAAAGAAGGGGGGGGGGGTGGACCAAGAAGCTAGAGTTGCTGCATCCTTGGCTGGTGGGTAGGAAGATGATAAACAAGAGACCACTATGAGTCCTTAGAATTGCAGTGAGTGGAGGTGAATGGAGGTTGTTCGTTCTTAACACTTTGAAAGAAACTGATTTCTCAAGTTTGCATGAAATCCAAGGCAAAGCGGGCAGTGAGCAGCGATGCTGTGAGCCTAGAGAGTGGCCCCCTTTCTGAACTGTGTAAGAAATGCATTTGTAATTCAAAGTGATGTCTTAAAGAAGGGGCAAAACTGAGCACGTATTGACATTGTTACTTGATACTAACGTGAAAACCTGAGGGTAATGGACACTAATAGAGGCAAATTCAGCCTGCTCCACTGTACAAACTAATTGGCAGCCCCCCTCAATATTTGTGGCCAGAAGGGACATGCTTAGGCCACATTAGGGCCCTAAAAATGCTGCAAAAGGTGGAAATCAGATATTTTAGATTCTGCATATATATGTTTTACAGCAAAAATATGAACCAGTTTAGAACATCAATATGCATGAGTTGATAGCCATCAATGGATAGTGTACTTCATATAAAAGTGTAAGCAATGATTTGGAATAATTTTTTATTCATTAAATACTAGACTGGGCAGTTTTTATGTGATCTCCATGCCATTTACATAGAATAAATTCAGCTCTTTTGAGATTCAAATCCACCCCCTTGTGGGTGGACTCTGATAATTACCCAGTTGCACAGCAGACCGTGGGCATGAAGCTTTGCCTGCATCCAGGAGGCTGGGAAGAGTGTTTTTCATCTTGTTGGGATGAGATCTGAAAACTTTAAAGATGAAGCTGGGCTAGTGGCCTAACAGATGGTTCTTTATAACTTAAAAAAAAAAATGCTGTGCCTCGTGGGGGTTGGGTGGGGGGCATGGGGCCACCAAAGGGACTCTAGAAAGAAATCAAGGGTCGGATCTTTCCATCCTAGGTCCAAACACAGGTCTCTCTCACTAAAAATTCGACAGTCATTAAGATAATTTTAGACTCAAGTGTTCTTTCCATAAGTAGGGAGGTGGGTTGGTGAGCAGCCTGGGGAAGCAGAAGTGGCTGTCTTTTACTCCAATTACATGCAAAGGGAGAGAAACCTCAGTGACTTCTTCGCTGTCCGCAAAGTGAGCCATAACCCCTGGGTTCTTCAGGGCGCAGTCATTCAGTTGTACCTCTCTGATGTCTGCCTTCAGGGAGGACCTTGATAGAAGGACCAACCACCCTCCATTTATGATTTTAACATCCTTTTTTTTTTTTCTCGGTGTTTTAAGTAGGCCCTTCACTCCACAGGTCTCCTTCTCCACACTCATGCATGGACCACCTACACCCACACTCTCCAGCCCTTCTTGCCTTTCACCGGCTCTTTGAAATGGCCTCTCGGCTCTCAGATCCCTGGCCGCTTCACTTAAGACACCGGTCGCTCCTCAATAGCTGAGAAACCTAGTAGCATTTATATCCCCCACTAGCCCCTCCCGTCTCAAGCCAGGGTGGGGTGGAGTAGATTAAGGCGGGGTGAAGAGGTTGGGGCAGGCCCCGAGGCCAGAGCTTCCTTATTGGCTAGTGGCTAGTGTCCGACCTGAGTCCGGAACCTGCGTCCCGATTCACTGTCTTCACCTCTTACCTCCCCCCTGCCCCCACCCCTCCAGCTTACCTCCCCTCTCCAGCGTGTCTTCCCCTCTCCTCCTGACTCTGTCACCCTCGGGGCTGGAAGGGTTGCTCTCCACCCTAGAGGAGTGGGAGGTTGGAACTTCAGAACTCCACACTTGTGATATTAGGAGAGAGGGAGCTGAAGGAGAGATAGGAGAAAGGGGCGGAAAGGAGAGGAGAGGACAGTAGAGGAGGGGAGAGAAGTGAGGCGAGCGAAGGAGAGAGAGAGAGACCCCTGCTGATCCTGAGCCAGAGGGCGGGTGCAAGAGGGGAAGGAGTCCGGGAGCCGTTCAGCCGCTGCAGCAGTAGCAGCTGGCGGCTGCCTCTGCTGCCCTCCGGAGCGCGGCGCGCACAGATCGCTGTCCGGGGCAGCAGCGCCTTTGCTGTCGCTGCCTCCGCCCTTGCGGAGCGGAACCCGGGCAGCGGAACGCGGTCTTCTTAGTCTAGCTTGGTAGCCGGGATCTCCCGCGCTCAGCTTAGGGACAGCTTTGAAGCTGCCGGACCGGACAGGGTTCCGAGGTCCTGCCCGGCAGCTCTGGCGAGCGGGTGGGTGAGCGGGCACGCTGATCACCCCTTCTCTCTTTCCGCTGGAGTTGAATCTCTGCTGCCCGTGTCCAG
Seq C2 exon
GTGCTGGGCTTCCGGACCGACACCGACGCCCCATTCCCGCCCGCAGCCGCCTTGTCATGCTGCCCAAAGTGGAGACGGAAGCCCCAGGACTGGTCCGATCGCATGGGGAACAGGGGCAGATGCCAGAAAACATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026398-Nr5a2:NM_030676:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.707
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: