HsaINT0116398 @ hg19
Intron Retention
Gene
ENSG00000074527 | NTN4
Description
netrin 4 [Source:HGNC Symbol;Acc:13658]
Coordinates
chr12:96059586-96063922:-
Coord C1 exon
chr12:96063854-96063922
Coord A exon
chr12:96059757-96063853
Coord C2 exon
chr12:96059586-96059756
Length
4097 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTTGACTTCTGTGTTAACAGTGC
3' ss Score
6.76
Exon sequences
Seq C1 exon
GTAAATGCGAATGTAAGGAACAGACATTAGGAAATGCCAAGGCATTCTGTGGAATGAAATATTCATATG
Seq A exon
GTGAGTCTGAAATCCTTGAATGCTTCTGAGAACCTATTCACACTAAGTTCAGAGAATTTTTAAGAAAATGGGAGGCCTGACTGATGACATTGTGTATAAATGAAAGCACAAAGCATTAGTCTTACATAATAACACTAAACACAGTGTTCTGGTCTTGAGCTAGATTTTCCTGATGTAGTTGGTGATGGATGTCCCAGGGAGGACAGAATGCTTGTAGAGCAAAGGTAGAGTTATTATACCATAAGAAAAAGAGGCAGAGAGCAGAGAGAAGAAATCATGACATGAAATCCTTTCTCGTGGATACTTCTTGCCTTATTCATCCAAAAGGGACATTTCTAGCCACTTCAGTGACTCTTGTGTTCGTTTGTCGTACAGTAATACTGAGTAGAAATCAGTTTAAGGCAGCATTTCATTATAGTTGAGAGCACAGGCTTTGGACTCAGACCTATGTGAGTTTGATTTCTGGCTTATTGGTGGGAGACTTAACCTCTCCAAATTTGTTTCCTCATCTGTAAAATAGGGATCATGCCACCTTCCTCGTGGAATGAGATGTTTGAAAAGCATGCAGCACATTATCTAGCACATATTTGATGCTCGGTAAATGGTAGGGGGAGGGAGATGATGTCTTACTTGTGAGGCACTGAGACCAGCTGTCCACCTGGGTCTCTTCCCCACCCTCTCTGTATACTCTAGATACCCCTATCTTTCAAATAACAGGAAAATACATCCTGTACAAAAAGGGAAATGGCACTGCCTAAGTAAAGACTGTTACTATCTTCAAATGGCTTTATATTTACTATTAAATATATTAAGATATCATATCTTGCCAACACATTCTTGCCTAGTGTCTGAGACTTTTTTTTTTTTTTTTAGACAGAGTCTCGCTTTGTTGCCCAGCCTAGAGTGCAGTGGCACAATCTAGACTCACTGCAACCTCCACCTTCTGGGTTCAAGCGATTCTCATACCTCAACCACCTGAATAGCTGGGATTACAGGCATATGCCACCACGCCCACAACCTCCACCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAGGTAGCTGGGACTACAGGCATGTGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTATCCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCACGCCTGACCTAATTTTTGTATTTTTAGCAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTTTTGGACTTCTGACCTCAAATGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATGACAGGCGTGAGCCACCACACCCAGCCTGAGACTTTTTATTGGTCTATAATATATATGGCCTGAAATATACACTACAATGAGGAGAAAATTTTAAGTCATCATTTATGAAACCAAGTATTTAGGTTCTGGATAACATTGTCTCTAATCTCATACAAGATTTTAAAAAGTAAATAAGTGGTAAAAACCTCATGAATCTTATCTAAAATTATATGTACACTTCCCTCTCTACTTTCTAACTTGGCTAAACAATAGAAGAAAACTTGAAATGTACAGCGCTCAATAAAGGAAAGGCAGTTTAGAGGGAATGGCATTGACTATTAAGAGCAAAGAATATGATAATTTAGTTCAAAGTCAGTTCATTCAGTGAAAATATCAACTGGTTTTCCTTATCACATCAACTTGGTAGCTCTCTGAATTTACAAATAACCAATCTTTTAATACAACTGCATTAATTTTCTACTTAAGAAGAATTTGAACGCTCTTAATGTAATGAAACATCTTGGTCTTATTAAGTGCAATACTGCTAAGACTTGGAAAAAATTGGTTTCCTCCTCCCCATTCCCTGGCTTAATAGAAAAAAAAAAAAAAAACACTTGACTTACTTGCTTACTCCTTTAGCAAATATCTATTGAGCAATAGAAGTGACAGACAAGGTCCCTGCTCTCTTTTAGCTTACAAGTCTAGTGGAATAATAATAGCGAACATTTACTGAGCGTTAGCCACACGCCGGGCACTATGCTCCCTGTCCTTCATGCATTTATCTCATCAGGGTTCTAGCCCAAACTCTACCTCTAGCCAACCAGTTATGTGAACTTGAAAGGTTCACTTTATTTATTTGTTTTATTTATTTATTTATTTATTTATTTATTTTTGAGAGATGGAGTTTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTGGACTCACTGCAACCTCTGCCTCCCAGTTTCAAGCATTTCTCCTGGCTCAGCTTCCCAAGTAGCTGGGACTACAAGCATGCACCACCACACCCAGCTAAATTTTTTGTATTTTTTAGTAGAGACAGGATTTCACTGTATGTTGGCCAGGCTGGTCTCAAAGTCCTGACCTCAGGTGATCCGCCTACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGTCCCTGCACCTGGCCTTAATTTCTTAAAACTTGCTTCCTCGTGTATAAAATACATGAGCTTTTAAGACCCCTTAGAAGTCTAAAATGTGATGACTCCATAAAGATAGCTGTCTGACGCTGTATTCGCAGAGTATGAGACCAGCCAAGATAGAGTGCTCTCATTACACACACTCTTCCATGGAGATGTGGATAAGCCGATAAGAACTTCCCTGTGAAAAAATATATATATATGAAAATTAGCCGGGCGTGGTGGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAAGAATTGCTTGAACCTCGGAGGCGGAGGTTGCAGTGAGCCAAGATCGCACCATTGTACTCCAGCCTGGATGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAGAACTTCCCTACGTTCCCTAGTGTTCCTGAGTAGCTCAGTGATCCTTAGCTTTACTTTCTTTCCGACCCCAAATTATTCCATTACTTAATCCCCAGCCATATCAATTTCATCAATGGGAGGGCGTAATAGAATCATAAGTCATACAGAATACTGGAGCTCCATCATCATGCATGGGTGTCCAGCCCTTTGAATGTGAAGACTTTTTGGTTTATCTGTGGTGGCGGATATCACAAAAATTATGCACAGACTTTTTGTTTCAGTTCATCAGCTATCATTAGTGTTAGTGTACTTTATGTGTGGTCCAGTGTGGCCCAGGGAAGTCAAGAGGTTGGACACCCATTAAGGGACAGCTTCCCTAACTCCAGTCAGCTTGCATTTTATTCCAGGAGAAGAATATTAAGTAGTCAATCATATTATATAATCTCTTTGGAATATGCAAAATATATTCTAGGAGTAGCATTTTTCTCTCTATCATAACATTAAACACAATCAGCCACAAAAGAATAATATAGTCAGAACCTAAATAAAAGCCAGGATAATTCTACTTCCTATGTTTCCTCTCTCTGTTTAGATGTGGTAGCTGAATGTATTTAAGATTATAATTGCAATAGGCAAATGGTTGATATTCTCTTAGGATAATGATATTGGAGGGAGTCACATTTGAAATTGCCTAACAAATAAGAATATAGTTAATATAGATAAACGAGATAAAGCCAGTGCAAAACTGAATGAGCCTATGATTTTTTTAATTCAGTATTTTTATTTTATTTTATTTCAATAGTTTTGGGGGAACAGGTGGTTTTTGGTTACATGGATGAGTTCTTTAGTGGTGATTTCTGAGATTTTAGTACACCCATCATCCAAGCAGTGTACACTGTACCCAATATATAGTCTTTTATCCCTTATCCCCTCTCTTCCCCCTGAGTCCCCAAAGTATATTATATCATTCTTAGGTCTTTGCATCCTCATAGCTTAGCTCCCACTTACAAATGAGAATATAATGAGGTTTGCTTTTCCATTCCTGAGTTACTTTCCTTAGAATAATGGCTTCTAACTCCATCCAAGTTAATGCCTAATGATTTTTAAAGCAAATTTTCACATCCTCATCATCAATTCACCTTTCCATTATATTCTGAAATGCATACTTGAGTGTTATTCAAACTTCAAATGATAATATGAAATTCTATGCATTTTGACTTCTGTGTTAACAG
Seq C2 exon
TGCTAAAAATAAAGATTTTATCAGCTCATGATAAAGGTACTCATGTTGAGGTCAATGTGAAGATTAAAAAGGTCTTAAAATCTACCAAACTGAAGATTTTCCGAGGAAAGCGAACATTATATCCAGAATCATGGACGGACAGAGGATGCACTTGTCCAATCCTCAATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074527-NTN4:NM_021229:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(9.3=41.7)
A:
NA
C2:
PF0175916=NTR=FE(52.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)