RnoINT0103712 @ rn6
Intron Retention
Gene
ENSRNOG00000005573 | Ntn4
Description
netrin 4 [Source:RGD Symbol;Acc:1565947]
Coordinates
chr7:34641539-34644140:+
Coord C1 exon
chr7:34641539-34641607
Coord A exon
chr7:34641608-34643969
Coord C2 exon
chr7:34643970-34644140
Length
2362 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTTGAATTATGTCATTACAGTGT
3' ss Score
3.34
Exon sequences
Seq C1 exon
GTAAATGTGAATGTAAGGAACAAGTGTTAGGAAACCCCAAGGCCTTCTGTGGAATGAAGTATTCATATG
Seq A exon
GTGAGTGTGAATCCTTGATGCTGGTGTATTCTCTATTCAGGCTACGTACAGAGGTTTCTAAGGAAACTAGATGCCTGGCTGATGCGATTCTGTACTGCATTAGATGCTTGGGCAATGGTAAGAAGGCTGTTCATGAGGCATTAATCAAAACTGGGGGTGGCATAGGCTTTGAATCCCAGCACTGGGAGGCAGAGGCAGGTGTATCCCTGTGTGTTTGAGGCCAGCCTGCTCTACAAATGGAGTTCCAGGATAGCCAGACTACACAGAGAAACTATCTCAAAAAAGCAAAACAAAAGATTGGTGATTCACCTAGGTCTGTTTCCCAATATCTCTAAATATTCTTCTACCATTCAAATGCCAAAAATATATAGCATATGGCAGAAGGAAAATAGTTTCTCTAATGAATGACTTTACTGTCTTCCAATTCTAAATGGCTCTGTAATCATAGTGTATTACACTGTGTAGCAGTGAGTTGGTTAACTGCTCTGGCTCCCAGCAAGTTGTGCACACACTGTACCTGCCTGAGAGCTGTCTAGATTCTCTCTCGAATGAAAGACACACAGACACAGACACACACACAGACACACACAGACACACACACACACACACACCACCACACACCACACCCCAGGTAATCTTTGTATGCCTTGGCAAGCTCAGCTGCTGGACACTCCTAACCCTCCCCAAAGCCAGCGCATTCTCCCCTCCTCCCAGCCATCCTGACTTAACGCCTCTAAATCTATATTTATACTTGTTCCCCTGGCTCCGTCTGGGCAGCCCCCTATCTTTGCTGCCCAAGACGCTTCCTGAGCAGCCTTTCTGGGGGCCACTTCTCCTTCTCTACCTACATTTGGTGGTTCCTCCCTCCTGTTCCCTCCCTCACTAGCCTTTCTCCATACCTACTCCCTTCTTTCATGGAGATCTCCTTTTTCCTCACTGTGTTTCTCTCCCGGGAACCATTAGCAGCACTCTCTCTCTCTCATCGTCATTCTTCTCTCTCTCATCTCTCTCTCTCTCTCTCTCTCCCTCCCCTCCCTCCCTCGCCTCCCTCCCCACCCACCCCCTGCCCCAGCCATTGGCCATTGGCTCTTTATTGATCAATCAAAAACCAATAGGGGATGGGGATTTTCAGTTTTTGGACACACAGATTCCAGATTTGGGGGCTGAATCCAGACAAAGCGTTAGAACCAATTCCCAACAACACTGTGTGCTACAGGGAGGGAGGGAAGGAGGGAGGGAGGGAAGATTGTAGGTATTTTTATTACAGAGGAATGATAAATGTTTGAACTGGTCTACTTTATTCTACATTTTACAATGTGTATATTAAAATATCACATAGGATTTCATAGGCGTGCTATTTCTATGTGTCAATTTAGAAATATTTTTTAATTATTGGAAATTAAAAGCAGGGTCTGGAGGGATGGTTCAGCAGCTAAGAACAGTTCTAGTCTAGCAGAGGACCAGGGTTTAGTTGCCACAGAGCAGCTCACGATGCTCGCTGTCACTCAAGGAGGGGATCTGATGCTTTCTTCTGGCCTCCCTGGGCACCAGGCACATGTGTGGTGCACATACATACATGCAGGCAAACACTCATACACATAAAATCAGAATAAATAAATCTTAAAATAAATCAAATGAGAAGAATACTGAAGCACTTCCAGCAAGTAGGAGTGCAGTCTGCCTCACCTGGTCAGCCCAGATTGTAGTTCAAAGAACAGTAAATAATCAATAATGTTACGTAACCTCTGTAGAAGGATGTAAAATATACTCTACCCAAGCATTTTGTTCTCTATCATAATATCATACACAGTCAACCAAAGGGGATAATATGATCTGAACCTAAATTAAAACCAGGACAATATTTCTACTCTCCTACTTATTCTCCCTGTAGATTTGATGCATCATTAGACTTCGTCTTGAATTTTCTTTCTTTCTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACAGAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTCCGGTGTGTGCTATTGTGCCTGGCTCAGCTGAATATACTTAAAACTGTATTTGCAGTGAATAGGCAATGGTTAATATCTTTCTGGTGTCATAATATTGGAGGAGGCAAAAGTTGAGATTTCCAAATAAAGGGAAAATAAAATATAAATGAGATTAAATCACCGAAAAAGTGAATGAGCCTCGTGACCTTAAAGGCAGATTTCTGTATCCTGATTTTCATTAACTCGCCCTTCCATCACACTTGGGAATGACTATTCAAATAGTTCCAGTTTCAAAAGAAAACATGGAACCCGTAAGCTTTTTCTTTCTTTCTTTTTTTTTAATGTTTTGAATTATGTCATTACAG
Seq C2 exon
TGTTAAAAATCAAGATTTTATCAGCTCATGATAAAGGTTCCCACGCTGAGGTCAACGTGAAGATTAAGAAAGTCTTACAGGCTACCAAACTGAAGATCTTACGAGGCAAGAGAACACTCTATCCCGAGTCCTGGACTAACAGAGGCTGCACCTGCCCGATCCTCAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005573:ENSRNOT00000007412:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175916=NTR=PU(9.3=41.7)
A:
NA
C2:
PF0175916=NTR=FE(52.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]