HsaINT0116410 @ hg19
Intron Retention
Gene
ENSG00000162631 | NTNG1
Description
netrin G1 [Source:HGNC Symbol;Acc:23319]
Coordinates
chr1:107973372-107979421:+
Coord C1 exon
chr1:107973372-107973539
Coord A exon
chr1:107973540-107979286
Coord C2 exon
chr1:107979287-107979421
Length
5747 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
GTGTTGTCTTGTTTCTACAGAGT
3' ss Score
10.07
Exon sequences
Seq C1 exon
ATTGTGAATGCTTCGGCCACTCCAATCGATGCAGTTATATCGATCTGCTAAATACAGTCATTTGCGTGAGCTGTAAACACAACACTAGAGGGCAGCACTGTGAGTTATGCAGGCTGGGCTACTTCAGAAATGCTTCTGCACAACTGGACGATGAGAATGTGTGCATAG
Seq A exon
GTCAGTTCCATTACAATTTCAGCTATTCTTCTGTGCCTTTTGAGCTACGGGGAGATATTTAGGGTGGAGAGGCTGGCGATTTGCACCGCGGTTGAGCCAGAATGAACTTTCTCAATGTAGAAAATATCCTATGGTAGATTTCACTTGTGATTTCACTTGTATTGGTTGAAATCATAGTTGGGGGATATACTTTGAACCCTTATGTTGTTGCTTTAAATATGATGATCTCAGAAATCATGTTAAAGAAATTAAGAATTTTCTTTCTTCCCGTTTTTTGCTTTTGTATGAAATTGTAAAACCTGATGATTCTGAACTGATCTTATAGCCTTAAACTTAAGGCTATACATTCAACTTTCAAAATAGAAACTCATTATATGCGATTTAATTATAGATATGAAAAATTAGGGTACAGATTCTTGCATATAATTGGTGATCAACGAGTATTGATAGATTGAAAATGTTGCTATTTGAGATTGAAAATGACTAGCAACTGGAAATGTAAAAGTTTGTCTGACTTCTTCATCCATAGCAATGAAATTCCATTTATTGAATTTTCCTACAGCTCCCAAAAAGGAGGAGTAATTTCTCAAAAGTATTCTAGGCAACTAATTATCTTAGCCCTGGAAAACTGCGTCCACAGAGGCCCCTGAGCACTTTCCCTTCCCTCCCCACCAATGACTACTGCTCTTGGCACCTAGGGAGGACCAGGCACCTTTCCCACCCAGAAAATCTCCTACCTTTTACATAGTGAAACCTGTCTTTAAGAATATGGGGGTGCCAATGGAAAAATAAGAAACAATAAATGGAATTTCACTTCATAATTCACTCTGAAGCAATGCATATATTTGAAATGCTGAAAAATATATGTGTAGCCATTACCACACCAGTAGGTAGCTATATAGGCACCCAGTTTTAAAGGTAGACTTTTTCACATTGAGGTACGTTCAATAGGATACACAAGCTGAATAATGACAAGCAATCTTTTTATCAAGAAAAGAAATCCAATTCGTATTTCTGTGATCATTGTCCTCTGATTGGATCGTCAAGATCCAAGTGTCACAAAAAAAAGCTGTTGAGTTGTTTTTAATCAAATTGGGCCAAGTATATATAATACTGTTGGTGTCTACAGTACTTTCTGTATTTCAGAGCATCTCCTTATTTATTATTTGTCAATTAGGAGAGAAAGTACTGGACTTAGAGGCCAGAAAGCTAGGCTCAAATTTCCGTTTGCTAGCTCATGGCTGTGTGCCATAGGTAAGTCATTTGAGCCTTCTAGTCAGAAAAGGATAAATGGGATGCACAGGAAACCCTTGGTCAACTGTGAACTGGCTTGCAGATGTCTTGTTTTGTTTTTACTTAATCCTCATTAACAAAACAGTGGGGTAAGTATTACACTAATTGTTTCCCCTGTCTTGTCATTGAGAAAAGTAAGGCAGATTGACCCAAATCTTACAGCAAAGGGTTTCTGACTTCAAAGCTTAAACACTTTCAACCACTGACACAATTAGCAAAGCTAAGCTTGTCAGACTTTTACTTATGGTATGTGTTTTGGATGACAGCAGCAATTCCACTCTGAGTTTATGAACAGAAGTTCAATTGTCTTCATAACACTTGGGTTACAAAGATTTGAGGATATTAATGAAAACCAAAAGACATGTAGTTGTCTGAATTTTGAAGGCAGAGTACATTTTACTGAATGTCATTTATAAAAATATATAAATGTCATGCTATAGATAGGTAAACACCAGAAAAACTAAAATAAATAGGAACACAGGATAAAAAACCTAACCATTTTTACATAAGATTAAAATGTTTTATAATATTTAATATGATTTTAAATCAATCTAAAAAAGTCCTTAAAAGGAAATATTTTATTCCATAAAATTTCTCTTATCAGGTAACTTAACAATATCACAATATATTTTATTCAGAGTATTTTATTATTATGAAGTTTGGCCTTTTTTCCAGTTCTGAAGTAAACTGTGAACTCCACATCTGCTTCTTTCTATCCAGTTTTAAGAGGTATAGTTCAGTTGTAAATCCATATTTGATTATCCACAGACTAGAAAACAATCCATTCAGTGTCTGTCTTTTAAATCAGATAAACTACAGAAGAAATATGAAAAAGATATCAATTTTGTATTTATTTTTACTTTTAAAAATCAAGAAGAGTTTTCCTCTCCATTTCTAGAAAGTTTATTAATTAAAATTATAAACTTTTGGAAAATTCCATTTTATCGAGGTAAACCTGTTTCTATTTAGTATTTTGTACTTGAAACCAAGCGAAGTACTTGGTGAACACAAAGGAGTGCATTCCTAGGTACTATTAAAGTTAGCTACATTAGGCCAGGTGCAATGGCTAATGCCTGTAATCCCAGCACTTTAGAAGGCCCGGGCAGGTGGATCACTTAAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCACATCTCTACTGAAAGAGATAAAAAATTAGCTGAGCGTGGTGGCCTGTGCCTGTAATCCCAGCTACTCAGAAGGCTGAGGCAGGAGAATCAGTTGAACTCGAGAGGTAGAGGTTGCAGTGAGCTGAGAGAATAGCGCCACTGCACTCCAGCCTGGGCTACAGAGCGAGACTCCATCTCAAAAAATAAAATAAAATAAAAAGTAATATTAGCTAGATTGTTCCCTCACCCACCATAATTTCTTAAATTATTGCCCTTTTCTAAAGAAGAAAATTGTGTTTCAAGAATGAATAGAAAAATTTAGCTAGCTGATAGGTACTAAGGTCTATCTTTTATCTGTAGTGCTTATATGCACACAATGAATTAATAACAATTTCCTTAAAAAGCTGTAGATTTCACTTACCCTGCTTGAGGCGCTGAGGACAGTGGTACTGGGGCTGCCTGTGCACTAGGCTGGAGTTTGCCCTCTCAGGGCCGTTGGAAGCCTCTGGCTCCTTTGCTAAGGTTTGCCCTATGAGACAGCATGAACCTATTTGCTATTTTCCACAATTAAGATTCCTAAAGGGCTTGCGGCAGGACTGTTAAATTCGAAAGGATACATCACAAGTAATTGAGAGTTAATCTTAATACCATTTTGTATAGAAAGCACTAATGAAAATGAAGGGATATTTACCCCATTCACTTTCACAGAATAAGGCACTAATCTTGGAAACTTTGAACTTCATCTAAGTCTCATCTACATTAAAAATAAAAAAAGAACACTTTGCCAATTCTTTAACAACTGACAATAAAATTCACCACCCTTGCTGTAAAGGAACAACTCATATCTTTGACAAAATGTAGGCTCTGTGTGATGAAATAGATGTTGTAAAATACTTGCATCATTTTATATTATGGCAAATATAAAATGCAGCAGGCTATTCCATGTTGCCACAGTGATTGCTGCTTTGTAATTACTGGTGAATTTGCCCATTTTTTCTACAAATTCCAAACACAGCCATGTCTCCAAAGATACATGTAATTACCCTGTAATGACATAGCAATTACATGAAGATGACATCCTTGCATGCTTCTGTTTCATGTAAACTTGAGCATTAAGCAGGAAGCTAGAGGATATATGGTTTGTGACCCTGAGTAATCACTGTTAATAATCCAGCTGACAAGCTTTGCATCACAATGAAACAGAGCTCAGCAGCTGCTGCTAAGCATTTCTTAAAATTATGATGTATAATTTTTAATTCCCCTTTGAAACCCATGGTTGGGTAATCAGAGGTACCTTAAATAGAATAAGGGGAACATAAGACACTTTTAATACCTGTAAATCAATTCTAGTATAACTTTTAAATGAAGCACCCCCTGCCAGGTATTTTACGTTGCTTTGTAATCTAACAGTCCTGCATGTTCTTCCTAATTTCATGGAATAAAATATGATCCTCCAAGACTCTTTGCATTACTCCAATATCCACCATTGACCATCATTCCATAAATGACACTTTTAAAAAACTGAATTATTTGTTACATAAGGTGAAGGGAAGGCCACACCCCTTCTTGTCCTTTATTTTCATGACTGCAAAACATTACACTTACCCACATTTTCCTATGACAATGACTGGGATATATTATGGTTTAAATGTTTTACTGTTTTGTTTAATTTTGTTTACATTTTTTGCCTCTAAAATCTTATATTAATTAATGGTCATGGGCTAATTGACTGGAGGAGTATGTGAATTCACGTTGGCCAGATGTAACTCTGCTTACTGGCTTACAAAACATTGGTGATTTATTGTCAACTTACACACTTTAAACAGTAAAAAAAAAAATTACAGTTTCGATATAGGTACAAATTTATAATGTGCCTATGTACAGACAAACATTAAAAGCTTTCACAAAATTAGTATTTTAAAATATTTTTAATCTGCTTCCATATACACATGCATATTAAAATAGAAAATGTTAATTTAAAATAAAACTCTAGTTGTTAAGTACAAACTAAGCCAGGCAAGGAGAGAGCATTTTAGAGTTTATTAAGTTTTATTTTTACCTACATATATAACTATTCATCATATAAATGTTTGTTTTATAAGAATGCTGAACTCGAAACCTGACTTAATTAGCATAAAATAAATCATAATTCTAAGGTACTCCACATTTATTTGAAGAATAATTAGTGTCTGTGACATAAACTTAGAATCAAACCCCTAGACCCATCTATAAGGCTAAACCCTGAATCCCCATAGCAAATCTAATATGCCAAACTTGATTATATTAAACTAAATTTTCAAGACTTCTCTTGGTTAGTTGGATGGTATAGTTTTATTTGGTTTTTCATGAGGGAACTGCTTAATGTACCCATTTTTAAATAATGGAAACTGAGAGGCACAATAACTTCCTCAAAAGTATTAGAAGAGTAATGAGGAAAGAAACTTTAGCTCACAGTACCCAAAAGCTGCCAGCTACCTGCACTATCTTTCCAGCTAATAGAAGCCTAAAGGATATCCATTTCTGGTTCAAGCTTTAAGCAAAATAGAGCTTCAGAAGTAAAAATATCCTATATAAGAATGTGTGAGGAATCAAGAAAACACTGTATTCACCTTTTATTGTGCAAAGCTGTATTGTCCTGCCAGCAGACATTATAATGAAAAATATACATCTTAAATTATAACTATGTTGAAAATTATTTGGGGTTACAAAGTTTATTTTTCTTTCATGATTGTTAAGCTGGGCTGCATAAAAGCTGCATTAATATGCCTAGCAAATACAACATCTAAAGGCTTATCACAAAATGGTATATGCATGAATAAGTTAAGATGCTGTCCCAAATCATAAAGTAAAACTACCTTTGAATGAGCAAAGTGCATTCATATTGTACTTTTAAAATGTTCAGCAGTTCTCAAATATTGAGTGCAATGGCTAAGCCCATTTGAATAATTTAAAACACATTTTACACTGATGGCATATTGATTTATCCTTGATATACAAACTTCTCATGGTGTTTATTAAACCATCTAAAAATATCCTAACAAATGGAATCTCCATTACGATCTGTTACCAGTGAAAAGCATGTCTTATTTCCTTGGAAGTTTTCAGTTGATTTCCTCCCATATCATAAAAATGATATCATGGAAGGCTAAGCGAATAAATAAATGGTTGTGAAATAGCCATATTTGCCGAAGCATTTCATTAATGGACATCTTTCTTTAAGTAAGTGATGCATTTAAGTACGTGACGCTCCTGTGTTGATAACCTGTAAGCCATGCAGACTTGTCTCCAGCCTGTGTGTTGTCTTGTTTCTACAG
Seq C2 exon
AGTGTTATTGTAACCCTTTGGGCTCAATCCATGATCGTTGTAATGGCTCAGGATTTTGTGAGTGTAAGACTGGAACAACAGGGCCTAAGTGTGATGAGTGTCTGCCGGGAAATTCCTGGCACTACGGCTGTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162631-NTNG1:NM_001113226:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(77.1=94.7)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(80.0=95.7),PF079748=EGF_2=PU(5.6=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)