HsaINT0116416 @ hg19
Intron Retention
Gene
ENSG00000196358 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:14288]
Coordinates
chr9:135037334-135042431:+
Coord C1 exon
chr9:135037334-135037626
Coord A exon
chr9:135037627-135041735
Coord C2 exon
chr9:135041736-135042431
Length
4109 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
ATTTTATCTTTACAACGCAGGCT
3' ss Score
6.07
Exon sequences
Seq C1 exon
CGCTCAGCCCGGGCGGGCGATGCGGGCGGCGCGGGCGGCCCCCTCCCCCGGCCCGCGTCTCCGGGACGGCTGCGGGCGGCCCCCCCGGCGGCCGGAGGGCTCCCTGGCCCCGATCTGACGGCGGCGGCGGCGGCGGCCACAGCGGCGGGAGCGGCGCGGGGAAGGAGCAGCGGCTCGCAGCCCTCGGCCCGCGCCCCCACCCAGCGCCAGCCCGAGGGGGGAGGCGCAGCGCCGGAGGGTGGCGGTCCTCGGCCCTCCCAGGTCTCCGCGCCGGGAAGCCGCTCCGAGCCGGG
Seq A exon
GTAAGGCGGGCGGGGAGAGCCCGGGAGGCGGGCGGGGGGAGAGGCTGCAGCTTGGCCAGGCCGGTTTCATTTTTAAAGGGCTTCGGTGACCATGCAGGCTTGCCCGGGCCCGGGAGCCACTTACAGCGGCCCGGCAAAGGCTCGGATGCAAAAGTTGTTTGGTGGCGGCTGCTACGAGCTGAGAACTGGAGTCGCCCCAGAGGGGTGTGTGAGGGTGCGTTCTTAGCAGCATCTTAAAGGGGTAGCTTGTCTTTCTGGCCAGCTTCCCCCGGGTCCTTTCCGTCGTGTGTGTGAGAGTGTGTGTGTGTGTGTGTGTGAGAGAGAGACAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCGGGGAGGGATGTTGCAAGGATGCTCGGATGTGTCTCGGAAAAGGAAACTAACCCTGCTCCCGCGCCTCTCCCCCACCCCAATTCCACCGCCACCGCTTAGAGCCACCCCCATCCCGTGCCCTCCCATCTCTCTGCAAACTGGGAGCCTGTGAGTTGCACAGAGAAACTCCCGGCCAGTCCGGCTGGAAACTTCTCCCGGCGCCGGGAGGGGGTCGGGAGGTGAGGGGGCGCAGGCACTGGTTTGGGGCCGGCGTGGAGTCGAACCTGGAACTGAGCGGCGCGCAGGTGGGGGGAGCAGAGGCGGCGGGAAGGCGGGAAGAGAGGACCGCGGGCTCGCGGGGTCCGCCCGCTCCGGAGTAAGTTGGCCGTCTGGGCTGGGGGCGGCGGCGGCCGGGTCGCCACAGGCGGCAGCGCCGGGGCAAAGGATACAGCCAGTTCCTGGGCGCCCTGCTCTGTGTCTTTTAATTAAGAGAGGCAGTGCCGAAAAAGGGGGCGCCTCAGTCCCGGCCGGGCCTTTATTACGGGCTTAATTATTAATTGCTGCCGTGGCTTGCACGCAACTTTGGGAAGACGAAAAGCAGCTGCGGGGCTGCCGGGTCGTCGGTGTCCTAGGCACAGGGCTCGCAGCCGGCCCGAAGCACTGACTCGACCCTGGCCCCGGCCTCGACCCCGCCCGCGGCCCGCCGGGACCCACCCGGGAGCTGCTGCTCGCGCCCCGCCTCCCGCGCCCAACTTTCCAGGGCTCCCGCGGGCGGGGACCCAGGGGCCGGATAAAGGGCCCGCTCCGGAGCGGGGGGACACCCGGGCCGCCGGAATTAAGAGGCCCGCCGAGGCTACAGTGAGCGCGGGGCGCCCGCTGGACCCCGCCCGGGGCAGAGGACGGGAAGGTGACCCCGCCGGCCAAGCTCCCTTTCCCTCCCGGCAACCGCCACTCTCCCCTGAAAGCAGATTTCACCCCCCTCTGCCGCCCCTGCCGAGGAGGGAGAGGGAACCCCGGGGTGGGCTGAGTATCCCCCCTAGCCCCGGGAGCCCCCAGCGCCCTCCCTCCCGTGCCCCCAGGGGCCCCGCGCCCGCCGCGGCAAGTTTCCCACACGGCGAGGGCGCAGCAGGCAACTCCAAGAGGAACCTGCTGGCGAGCCCAGCCAGCTCGGGAGGCGCTAATTCAATAAGACAGAGAAATCTGAGTTCAGAAATCCTGATAAAATCTAATTTTCGAGTTTTAATACCCTGGCTATCAGCCCCCCTTGGTTCCTGAGGACTCTTAAAAGAAAATAAAGCACATTGATTCTATTTGTTTCTGGGAGCTGCAGTTTCTTAATAATATCAGGTGAAGATAAATTTTCCACGGAGAAAACGATCCTCCGGGATGCAGCTTCTTACTCTGAAAATTTCCCTGCCGACTCCTCACTCTCTGCGCTCCTCCTCGTTATCCGGGGACTCCTGCCTCTCTTCCCCCTTCTCTTTTTTCTTTTTGGCAGAACCCGCCTGCAATATTCGTGTGCTGAGCTCGTAATTCCCCCTGCGATGCCAGCAACGCCCAATTGATTGACTAGTTGTAAACACATTTTTCCCCTGGCAGATTTTGTTGTTGTTAGGGTTTTTTAAATTTATTTATTTTCCAGGGAATGCGTGGCATTTAAACCAACAGGACTGCAATTAATAGATTTGCGAGTTGCGCCGCGCGCGCCGCTCGCCCCAGCCTCCCGGCCTCCGGGCCTCGCTGCCTCCCCGCGCCCGGCGGCGTCCAGCGCCCTGCAAGCCCCGAGCAGCCGCGGGTCCTGCAGCTGAAGGAAGGTTGCAGCTGCGCCCTCCTTGCAAGCCGCAGCCCGGCGTCCTGGTTGTCCCAGCAGCCAGGAGATCCCTACCTGTTAGTGAACAGTTAGGAGTCGACTGCTGGAAGAATTAATTAGGAACGTGCTGTGCTCTGGGCAGCGCGAGCTCGGGTAGAGGCATCCAAACCTTTGCCGGCGGCGCTATTTTATTTTTACTACATTTTCTCAGGTTGCAAAAATAGACACCGGGCACGTTCTGTCTTAGAGTTTTCTAGCAAGGAGCGCCTTCAAGGCCAGGCAGGCTCTGTAACAGGTTCCCCTTTAAACAGCCAGAGGTGAGACGGGGAAAATGGTCCTGGCTGGGTTCTCGTTCATCTCCATCAGCAGTCCTTCACCCAGAGAGAGGGGCAGGGGTCGCCCTAACTCAGATGAATGAGTCCCATGCCTGGAGCCCTGGGGCCCTGGCTGGGGGCTGCTCCGAGCCTGAGGTGCTCAGGGCGCTCAGGGCAGCAAGTGTCCGCCACTTCGGTTTGTCATTTTTGGCAGGAGCGTTTTTCTGTCTGGGTGGAGAATGGAGTTTCACGGAAACACAGTTAACTCTTCAGGGGCCTTGCAAGTACAGGAGGTGAAGAGGATGTCAGGGGAGAGCCAGGTCCAGACTGGACATTTGGGGTGGTTTGGGAAATCAAATGCAATCATCGAAGACATATTAACCAGAATAATTAATCATGCAGGCACTTTTTTACTGCAGTAACCTTTGCCCTATTGGCCAATATTTTTGGCCAGAATCCCATGCTGGCTGGACTTGGATTCTCCGGGTGACGTATCCAGTGTCTGGAACACACCACAGTACTGCAGTCGTGTTATTTCCCAATGTAACATTCATGTAACTGGTATCTATTTTGATATAATATATTAATTATATCTATTTTGATTTTAAATAATTAACAGAAGCTTAAAATAGCACAGCAATAATCGTAATTGTAACCCATTTATAGACCTACCCTCTAAGAATGATTTGCAAAATGCTGGCCTTGATCAGAAAAATCTGAACTCACAAAGCATTGTTACCTCTTTGGCAGTCTTCAATATCCCTAGTTTCTTACAGTTAAAAAAAATTAAATTTGCCATTTCAGATTGTGCCTATGATTGGGGGGCTGTTTCTCAGTGCCTGGCTCTTCATGGTTGGCCAGCACGTGGAGCACTCTGTTCATCTGTACATATAGGTATGGGTCCATCTGCACCTATAGTTACATGCTCATCTTTGCCTTTAACAACTTTGACATTCTGACTTGACAGTCATGGTATTTTAAAGCAACCATTAAATCTTGGCTCCTGGGGATGCTTTTGAAAGTCTCTGACCCCCAAGCCGGGGCACTTCTGCTGAACTAACACTCCCATAAATGAGAAAAAAATGCATCACCTTTTAAATAACATGCCCGATCTCCAAATGTGCAACTCTGATATTAATAAAAATAACCCAGTTTTCTCGGGAGACTTTGCTAATGCAGCCTCATTTTTTGCACATTTTGCCGGAGAGCTTTTGTTCTTATACGTCTCTATTCTCCCCCTCTTTAATTTGTTGCAGGTGTTGTTGCTAATGAGCTCTCTCTCTCTCCTCCCCTCTTACAATGAAAGACAAGTCAGACCCCAGGTACCTGGATGGATTGAGAGCTGAGATCTCAGAAACTTCATAATAAGTTGCCGATGGCTACCAGCCAAGGTCAGCTGGGCCCCATTAGTGCCGGCCCCCACCAAAGCAGAACCAAATAGCCTTCTCCCCAGTGAACACCTCAGTAGCTTTTCATTCTAGTCCAGTCACACAGCTGTTGCCACCTTAAGCTCATATGAAAGAAATCTCTTTTATTGGTCTGAGAACCCAAGTCCAGTCCCAAAGAGGGAACATGTTTCCAGCTAACATGCCCACCTCCTGATTTTATTTTATCTTTACAACGCAG
Seq C2 exon
GCTGGAGGGTTGTTTTGCCGTTGTGTTGAGCACGTCACCCATTAAGAGCCCTTTAAAGACCTGGATTGATTGGAAGGACAAAAATTAAAAGCAATCTGATCCAGCCTCATGCAGGATCCCTGCGGATTTTCTCCTTATCCCATTTCCATCCACTGTCACAATTTGAGAATCTGCCTGATTTGATCAGATTCACCTCCAGGGGAGGTGTGATACCAGGGTTAGGAGGACGTGAAGTTATGGGCAACTTTCTGATCTGTCCATCAGCAGTCTGAGAAACGCTGGCTCTGAATTTTCCGTGTCGGCCTTTTGGAAACAACAAGTTCCTCGCTGTTTGCAAAGCTTCAGTGCTCGGGTCCCTGGGACACCCCGGCCACCCTCGCCTGGTAGATGTGGCATTTCCATGCTGAGGCCGCGAGTCCCGCCTGACCCCGTCGCTGCCTCTCCAGGGCTTCTCTGGGCCGCGCCTCTGCAGACTGCGCAGCCATGCTGCATCTGCTGGCGCTCTTCCTGCACTGCCTCCCTCTGGCCTCTGGGGACTATGACATCTGCAAATCCTGGGTGACCACAGATGAGGGCCCCACCTGGGAGTTCTACGCCTGCCAGCCCAAGGTGATGCGCCTGAAGGACTACGTCAAGGTGAAGGTGGAGCCCTCAGGCATCACATGTGGAGACCCCCCTGAGAGGTTCTGCTCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196358-NTNG2:NM_032536:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0005512=Laminin_N=PU(13.0=45.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)