MmuINT0005751 @ mm9
Intron Retention
Gene
ENSMUSG00000079499 | 6530402F18Rik
Description
RIKEN cDNA 6530402F18 gene [Source:MGI Symbol;Acc:MGI:1923470]
Coordinates
chr2:29100636-29108513:-
Coord C1 exon
chr2:29107985-29108513
Coord A exon
chr2:29104399-29107984
Coord C2 exon
chr2:29100636-29104398
Length
3586 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
ACCCCCTTAATTTGTTGCAGGTG
3' ss Score
10.01
Exon sequences
Seq C1 exon
CGCAGCCCGGATCAGACCGGGAGATAAAAGCCCCGATGGTGACCGTGAGTGATGGCAAGAGGATTTAGCCTCGGCATTAACTTGGAGCGGAGTGCAGGGGGGCGGTGAGGCGCCCCGCCATCTGGCCGGCGCCGCGCCAGGGGGATGTTCAGGCGCCTGGACCAGCAGCGGCGAAGCCCACCCAGGCCAGGGGCTGAGTGGGGCGCGCGTGCAGGTTCTCCCCTGGCTGCCCAGGGGGCCCCAAAAGTTTGCACTTGTTAACAGCGACCTCCCGATCGGCCCGGGAGGGCCATGCAAGCCGCGCGGTTGGCCCCCTTCCCTGGCCCGCGTCTCCGGGACGGCTGCGGGCGGGCCCCCCGGCGGCCCGAGGGTTCCCCAGCCCAGATCTGAGGGTGGCCACCGCAGCGGCGGCGCGGGGCAGGAGTCTCCAGCTCTCAACCCTGCGGCCCGTGCGCCCACCCAGCACCAGCCAGAGGGTGGCGGTCTCCGGCCTCTCGGGGCTCGCTCCGGGAAGCTGCTCCGAGCCCGG
Seq A exon
GTAAGGCGAGCGGGGAGCGCCGGGGCGGCGGGCGGGGACGGAAGCGCCGCAGTTTCGCCAGGGTGCTTTCATTTTGAAAAGGCTTCGGCGACGGTGCCAGTTCTCCCCGGACCAGGGAGTCACTCGGAGCCTCCTAGCCGAGGTTCGGACGCAAAGTTATCTGGTGGCGGCTGCTACTAAAGGAGGGCTGGAGCCGCGGAAGAGGGGTGTGTGTGCGCGCCGGGTGCAGCATCTTTAAGAAGTAGAGTAGCTAGTCTTCTCTCTGGGCTCCCCGCCACCCAGCTCGTCTTTTTCTATCCGAGCGCCTGTGTGGGGAGGGGATGGGCTGTTGCAATAACGCTGCTTACTCGTGTCTATGAAAAGTAAATTAACCCTTCTCCGCCGGCGCTCCCCTCCCTAATTTAGTCTCCTCTGGGCTCTAAAGGCGCAAGGAGAACTCTTGGCCAGTCAGGTTAGAAACTTCTTTCGGTGCTGTGGAGGGGGTCGGCAGGCGGAGAAGGGGGCTCCACCACCGTGGAGAGTCGCACTCCAGGGAGAGCAAAGACGGGAAGTGGACCTCCAGATCTCGGGTCCGCCCGTTTCGGAGTAAGTTGCGGGTCTTTGCTGGGGGATGGCGGCGACAGGGTCTCCGCGGAGCAGCGCCGGGAAAAAGAATGCGAATAATTCCCTGGAGCTTTGCTCGGTGTCTTTTAATTAAGGGAGGCGATGTCAAATGAGGGGGCAGCCTGGATGCTAGCCTGGCCTTTATTAAAGGCGTGATTATTAATTGCGCCGGTGGTTTGCACCGAACTTCGGAAAGGCAAAACGCAGCGGCGGTTTGTGCTCTATGTGCGGTGCACGCCACTGTCTACGCGCCCGAGCTCAGCGCGGACTCAGCCAGACTCCTGGGTGTCTGCGGGCCTCAGGCTAGCCCCGCCCGTCCTCAGGGACCTACACGAGGCGGCCTCAGCTATACGTCCTCAGAGCTGGGTGTTCTGCCCCGCCCCCAAGAGCCCAACTTTTTGGGGCCCTCCCAGCCGCTGTGAGGGTGACAGGGAGAAACCAGAGTCTGGAGAAAGCTCCCTTCCCAGAACTGGGGACACCGGGACACCCGAACCCGAACGTCCACCAAGGCAGCGGTGAGCGTGGGACAACCCAGGGCGGGGTGGGGGTGGAGGGGAGGTAACCGCCGGCCGTGGGGTTCCCCTTCCCTTCCCGATCCTTCCTACGGCCTCCAAAGCAAGTTTCAGCTTGGGTAATTCTTCTACCTTTTGTCCAGCCTGGGTAGAAGAATTAACCTCCGGTGGACTGCCCCCCCCCCCGCCTCCCCATCATCCCCAGGGACCCTGCGCCCCGCAGAGGCAAGTTTCCCACAAGGAGAGCGCACAGCCCGAGACTCCGGCAGAGCCTGTTGGCAGTCCGGCCAGCTTGGAAAGGCGCTAATTCAATAAGACAGAGAAATCTGAGTTCAGAAATCCTGATAAAATCTAATTTTCGGGTTTTAATACCCAGGCTATCAGACCCCCCCGCCTCGGTTCCTGAGGACTCTTAAAAGAAAATAAAGCGCATTGATTCCATTTGTTTCAGAGAGCTGCAGTTTCTTAATAATATCAGGTGAAGATTTATTTTCCAAGGAGAAAACGATCCGCGAGGATGCAACCTCTTACTCGGAATCTCTCCCCTGCCGGTTCCTCGCTCCCTGCTATCCACCTCGTTTTTTCCGCGGACTCTTGCCCGAGTCCCCCGCCCTTTATTTTCTTTTTGGCAAAAAATCTACTGTAATTTTCGAGTGCCGAGCTCACAGTGCCCCCTCGATGCCAGCAACGCCCAACTGATTGACGGGTTGTAAACACATTTTCCCCTGGCAGATTTTGTTGTTTCCCCCACCCCCCATTTTCTAGGGATTGTGTGGTGCTTAAACCAACAAAATTGCAAAGCAATTAATAGATTTGCAAGTTGCGCCGCTTGCTGCTCGCTGGGGCTCCGGCCTCAGGGCCTCGGGGCCTCGTTGCCTCCCCACCCGAGCCGGAATCCAGCGCTGTCCCAGCCAGGAGCAGCCGCCGGCCCTGCAGATGAAGCCGGCTGCTGGGCCCGCCTTGAGAGCCGCAGCCTGGCGCTCAGGTCGTCCCCAGCCGTCAGGAGCGCCCTACCTGTTAGTGAACAGTCGGGAGCCGGCTGCTGGAAGAATTAATTAGGGGCATGCTGCTTTCTGGGCAGCTCAGAGCTTGGTTGGAAACGTCCAAACCATTGCCGCGCCCGAGTTACTTTATTTGTACTACATTTTCTCTGGTTGGAAAAAAAAAAAAATAGACGCTTGGTCACGTTCTTCCAGGGAGTTTTCTAGCAAGAAGTGAGCCCGGGCCCGGGTCTAGAGCAGGTTTCTGTTTAAGCCGTCAGAGGAGAGGTGTGAAGTGTGGTCTGGCTGGGTTCTCATCCATCTGTATTAGGAGTCTTTCATCCCAAGAGGGGGCAGGGCGGTCTTAACCTAGATGGATGAGGCCCACTGCAGCCTGCAACAGAACACTGGCTGGGGGCTTACCCCTGAGCAAGGAGCTCTCTCAGCCAGGTTGGACCAAAATGTCCCATCCTCCTGCCTGTCATCTGAGGGCAGGAATGTGCTGTGTCTGTGTGGCAGTGTTTCATATAAACACAATTAACTCCTCTGGGACTTTTGGTATATAATGGCTAACAGGGGCTTCCTTCAGGTGAGAGTCAGGCCGCCATATGTGAGGTTAGGGAATTTAAAGGCAGCAACTGTGAGCATTATAACCAGAATAATTAATAACAGAGACTTTATTTATTTATTTACTTACTTACTTATTTACTTTCTTATTTTCTACATCCATCACAAAACCTTTGCTCCCGTTGGCCAGGGGTTTTGGTGGGGGTCCCATGCTGCCCAGGACTCTTGATTCTCCCATGTAGCTCAAGCCTGGGAATACACTAGAGTCTGAGAGTCATGTGTTTCTAGACGCAGTACTCCTATTAGCTATATCTATTTTCGCTTTTAAATGATTACTGCTGGCTTAAAATAGATGCTACTCTCCTAAAATGATTGCAAACTGTTGGCCTTGGTCAGAGAGTCTAACACAACAAAACACTTTATTCCTGTGGAAGCTTGCGGCATCCCAGCCTCTCGCTGTTAACTCGTTTAATTCATGGTTTCTCGTGGTGTGGGTGACAGGGAGTGGACTGCGGGTGGCCCACACAGAGACCTTCCTATTGGGCTGTAGCGGGAGGAGCACAGTATGCTCTGTCGGATGCTCAGGGCCTCTTTTGACAACTTGAACATTTTGTCTGTTCTGGCCTAGTGTGTTAAGGCAACTGTTAAACCTTGGCTCTTGGGGGGGGGGGGACGCTTTAGGAAGTTCCTGATCCTCAAGACAGGTCACTCCCATTGAACAAACACCCTCCAGACGATGAAGAGATACACCACCTTTTTAATAGCGCGCCCATCTCTAAACATGTAACTCAGATATTAATAAAAAACAAAATAGCCCAGCTTTCTCTGGAGATTGTGCTAATGCAACCTATTTTTTGTACACATTTTGCCAGACAGCTTTGTTCTTCTATGTCTCTAACTGCCCACCCCCTTAATTTGTTGCAG
Seq C2 exon
GTGCTGCTGCTAATGAACACATTCTCTCTCTTTTCTCTTCACAATGAAAGCCAAGCCTGAGCCCAGGTACCTGGATGAAGTGAGAGTTGAAGTCTCCGGAATTTCACAATAAGTGGCCAATGGCTATGAGCCAAGGTCAGCTGGCCCCCGTGCCTTGGCCCCATACCAGAGCAGAGGCAAATGGCCTCTCCAGTTAGCACCTCAGTGGCTTTTTGTATAGTCCATTCACAGGGTTGTTGTCACTTTCAGCCCATATGAAAAGAAATCTTTTTATTGGTCTGAGAGACCAAGTCCAGTCCCAAAGAGGGGACTGTGTCCATCTAACACGCCCACCTCCTGATTCCGTGTTATCTTCACCGTGCAGGCTGGTATGCGGTTGTGTGCAGCACGTCGCACATTAAGGGCCCTTTAAAGACCTGGATTGATTGGAAGGACAAAAATTAAAAGCAATCTGATCCAGCCCCATGCCGGATCCCTGCAGATTTCCTCCTTATCCCATTTCCATCCACTGTCACAATTTGAGAGTCTGCCCGATTTGATCAGCTTCACCTCCAGGGGAGGTGTAACACCAAGGTTAGGAGGACACCAAGTTACAGGCAACTTTTTGATCTGCCCATCAGCAGCCTGAGAAACGCTGGCTCTGGATTTTCTGTATCAGCCATTTGGAAAACACAAGCTCCCACTATTGGCAGACCTGCAGTGCTTAAGTCAACGGTACACCCCAGACACCACCGCCTGGCAGATGTGACATTTCCATGCTGAGGTCCCAAGTGCCCCCTGACCCCACCACCACTTCTCCAGTGCCGCTCTGGGCCCCACCCATTCGGACTGCGCAGCCATGCTGCGCCTGCTGGCTCTCTTCCTGCACTGCCTCCCGCTGGTCTCTGGGGACTATGACATCTGCAAATCCTGGGTGACCACAGATGAGGGCCCCACCTGGGAATTCTATGCCTGCCAGCCCAAGGTGATGCGCCTGAAGGATTATGTCAAGGTCAAAGTGGAGCCCTCAGGCATCACGTGCGGAGACCCCCCTGAAAGGTTCTGTTCCCATGTAAGTCACCCCATGGCTTCTCTATCACTGCATTGAGGGGTGGGGGACTGTGAGCAAAGACAGACCTGGGGGTGGCTGAGCAGAACCAGAGGGCCCTGCCTGATACAAGACCGACTCCAAGTCCCACCAGGGAAGATGCCAAAGCCAAGCTGCCCTGAGGACCGGGGGGCTGAGTGACATTTTGTGGGTGAAAGAAGTCTTGGCCAGCTGACCCTGGCATGGTTTCCTGCCAGGGATTGCACAGCAGTCCTAGTTCCTTGACTCAAAGCCAGCCCCTCCTCCTTTGCAGGAAGTCAGCATTCAGACCAGAGATCTGAATACTATCTGCAAGGTTACCCTCCAACCTGCATGGGTTCTCACCCCCTCCCCTTGCTCTAGTGGAGCACCCTCCCAACCTGCCCAGTCCAGCCTAGTACATAAGTAGCATTCATGATCCTAGCTCATGCCAGGCACTGACCAAGCATTTTGAAGGAGGAAGCAGGGGTGGGGAGATCAGGCTAGATAGACAGGACAGCATCTCAGCTGGTGCTATCCCCTAGTCAAGAGGTCAGCGCTGAGGCCTTGTCATGTGAGCTCCAAGAAGAAGGGGTCTTGGAGCTATCAGGAACTTCAGTGCTTAGGCAATGTTAACGAGGGCAGTGGGAATAGCAGCAGCGTTTGACAAGAGCTCAGGATGTGGGGTGGAAAGCCCAAGCAGTGTTACTCTACTGGGTTTTCCCCTGGGCTCCCCCAGGCTGATTCTACCTTAAACAACGTCAGAATGTTGAAATGGAGGGAAACGTTGAGACAGGTCTCAGGCCAGTGTCACCATCTCCGGGTTCTGCTCTATCAGCTGTAGGATGGGTGCAGCAACACAGTACATTAAGGGGTCAATGGCTCTGTGGATACAAGTTGTTCAAAATCAGAGTGGGCACAGAGAAGGTGTCCCAGACGTTAGCTTGTTCTGGTCATATGGATAGGGAAACTGAGGTGGGGGTGGGGTCTTCAGGGAAGGCCCTTGGCCAAGGTCACACAGCAGAAAGTGGTGATGCTGCTGAGTTAGGCTCAGCCTGCCTGACGCAGCTGCCTGTCCCTGGCAGAGGCTGGGCAGAGCAGCCAGAGGAGCAGGCAAGAGGGGTCCGATGTCACCCTGCAGGTGGCTGGTGCCTCTGCGTGTCCTTGGGGAAAGCTGGGTTTATTGCACAGTCAACCTGGTGTCCCCAGCCCAGACTCCTGAAAATGTCTCAGTCCCTTGGGGTGGCTTCAGTCACCATGCAGAGAGAGCAGCTAGCTCAGGAAGGCAGATCCCTACTTGGGCTTGTCAGTGGTGATGAGGCTGTCACTGTAGGTGGTGGCTGGGCCTGGGCCAGCTTAGAGAAGGGGAGGGAGTGAGGGAAGGAGAAAGAGAGAAGACAGCCCAGGGCTAGGAGCCAAGATTGGATTATGTATGGACATTGTCGAGCTTCGAAAGACCACGCTGGCTCAAGACAGGCAAAGGGCCCTGAAAGTTAGAGCTGAGGCTATAGAGCCTCCCATTCTGCATCCTTGTCTCAGCTCCTGTGGGAACTGCTTCAACCACACATTTCCCAGGCAGAGTCTCAACATGATTTTGTCTTTTAAATATTAATCATTGCCAGGGTTTGGGACAGTTCATGGGAATGGCTTCTATTCGAGTGTGTAGGAGCTACAGATGACCACCAGAAGCAAATATGGGGCCCTCTCCTGGTTTGTGACCTTGATGATGCTGAGCTCTGGGGTCTGGATAGGTGGGAAGTCCAGGAGGAACCTCTGAGCATTTTATCACTTGCTTGATGGCTGCAAACGTTCCATGACAGGCAGGTACAGCGTTGCCTTTGATTACAAGTGTGAGACTAGGGAGAATGAAGTGCCACAGGGGCAGGTGGAGGGCAGCCCTCAGAAGGTGCTGCAAGGTACACCCCAGTCTAATCCCTTTTTAAAGATTAGAAAGATTGCCTAAGTCATGCCAAGGTCAAGGAGCTTAGCAGGCAAACCAGAAACTCGTCTGTGGCCAGAGCGCGTGCTTATCCACCAGGGTTCGTGGCTTCCCTCTCTGAGCCTCCGTTTTCTTCCTGTTTCAATAAAACACGCTAATGTAGGTGTAACGTCACTGCGCTGGCAGGGAGACAGCTGGGCCAGGCACTAGCAAGCACGGGCACGGGGGAGTGCTTTAATGTGCAGTGGCCGTAATTATCTTACGTCACCATTGTTATCACTCCCTCCGTGGCTGCCTGGGTTTCTCTGCTTCCCTGGAGTATATTGCTTCACTCCAGCCTTGACCACATCCCAGTCTGCACTTCTCAGCTACAGGCAGCAGCAGGTGGTAGATGAACACCCTAAGCCAGAGCAAGTGTGCCTAGCTAGCCAGCAGAGGGCACCCTGGTGGCAGCCAGACCACCCCGTGCCCTCTTAGTCTTCTAAGCTAGGGCCAGTTCATCCCTGCTCTCTGGCAATCCTCCTGCTAAGGAGTATGGGCCTGCCTGTCCCAGCATGCAGGCAAACAGAGCATGAACCCTGGAACAGCCTAAAGTACAAGACAGGACAAAAGGGCAGTTGCCCTTTTCAGTCCCAGGGTGTGACCCCTACTGTCCCAGGTTCCTGTCCTTCAGCAAGGCCACTAGAGAATTGAATTGTAAATTCCAGCCTGGTAAGGAAGGGGAGGGGGGTAAAAGACAAGATAAATGAATAAATAAAAACCTATTGGCTCTAAACGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079499-6530402F18Rik:NR_029460:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: