HsaINT0117094 @ hg19
Intron Retention
Gene
ENSG00000126883 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:8064]
Coordinates
chr9:134070620-134074402:+
Coord C1 exon
chr9:134070620-134070681
Coord A exon
chr9:134070682-134072602
Coord C2 exon
chr9:134072603-134074402
Length
1921 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TGATTTCTTTTTCTTGCTAGGGG
3' ss Score
8.53
Exon sequences
Seq C1 exon
GACTGGCTTTAATTTTGGGATAATCACACCAACACCGTCTTCTAATTTCACTGCTGCACAAG
Seq A exon
GTACAGACTCTGTGTTGAGTAGCATTACTCATGTGTTTTCTCTAAATAAGTACAGGTTATTTTTGCCCACATGTTAGTATTTGACTTGTTCCTGAATCTTACTTACAGTATCTGCAATAAGCTCAGTGTTGATAATGTGCATTAGAAATATGCTTAATTTAAGAAACTGATGTGAAGGATTTCTATTTTTATAATTAAGGACAAGGAAAGGATTTGCTTCTAGAAAATCAGGGCTGTGCTTTAACATTTAAATGTTAACATGTGAATTAAAATTTCTCCATTTTTTGTCTGTAATTTAAAATTTCTTCAATTTATAGGGTGATTCTGTAGGGCAAGATAGACATGGTAATAGATAGACTGTAGAAATGAAAGACCAAACTCGTTTTTTTCCTTGATAACATACCAGCAAACACACTCATCCCATGCATGTTGTTAAAAATCCATCAATAGACTGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGACCAACATGGAGAAACCCCGTGTCTACTAAAAATACAAAATTAGCCAGCCGTGGTGGCGCATACCTATAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCAAGGTTGCAGTGAGCCAAGATTGTGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCTGTGTGTCCCCCCCCCCCCCCGCGCCAAAAAATCCATCAATAGCATGTTTTTAACATTTAAAAGAATTTGAAGCCCTATAAAGAAACCAGATCTATTTGTTAAGTGCCTTTCAGTTATCCGTTTATGATTAAGTCTTTTATTTTATTTATTTATTTTGAGATGGAGTCTCACTGTTGTCATCCAGGCTGGAGTGTAATGGCGCAATTGCAGTTCACTGCAACCCCCACCTGCTGGGTTCCAGCGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGCGCCCACCACCACATCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGATTGATCAGGCTGGTCTCGAACTCCTGACCTCGTGATCCACGTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACGCCCGGCCTCGTTACTCTTGTATTTATTAACCACTGTTGTTTGACCAGGCCTTATGGGTGCTTTACCCATATTTCCTGCGATCTTTGTAACAGCACAATGAAGGTAGGTATTGTAATGATCTAGATTTTCCAAATGGGGGAATTGAGGCTCAGAGAGGTAAAGCAACCTTTCCAGATTCACACAACCAGCGAGTGGCAGAGTGCATAGCTCCAGAGCCCATGTCCTTGACCACCAGACCGTACTGCCTCTGTCAAATAGCTGACTTAGTAGAGCACTAATAAGTAGCCATTAATTGTACATAAAAATGATTTTCTGTGGACTGACACTTTATTTGCTCATAAAAATGAAGGAAGAACTTCCATTTTGAATCAAGTCCTGGTCTATCAGGAGGTCCACAGGCCATTGCTGTGCTGAGGATGTTATTAAGGAAAGCACACAGCTAGGGTAAATTAAGGGAAGAGGCTTTTTTATTTCTCTTTGGGATAATATGTTAATTTCACATATTCTAGATATTTTGTATTTGTTGTGATTTAATGGTCATAAAAAAAGTATTTTTTCCTTTTCACCTCAGACGACTCAGAGCTGATGTTTGTGTGGAGAAGCACTCATTCCACCTCCTTAGAGAAAGCTGCTGTGAGAACAAGGCACCCTGACTCTGTAGAGGGAGGAGAGAAACTTTGGCTTAGAAACACAATCAGTGGAAATGTAATGGGTCATCTTTTGCTAAATCCAACCCATTTTCTGATTTCTTTTTCTTGCTAG
Seq C2 exon
GGGCAACACCCTCCACTAAAGAGTCAAGCCAGCCGGACGCATTCTCATCTGGTGGGGGAAGCAAACCTTCTTATGAGGCCATTCCTGAAAGCTCACCTCCCTCAGGAATCACATCCGCATCAAACACCACCCCAGGAGAACCTGCCGCATCTAGCAGCAGACCTGTGGCACCTTCTGGAACTGCTCTTTCCACCACCTCTAGTAAGCTGGAAACCCCACCGTCCAAGCTGGGAGAGCTTCTGTTTCCAAGTTCTTTGGCTGGAGAGACTCTGGGAAGTTTTTCAGGACTGCGGGTTGGCCAAGCAGATGATTCTACAAAACCAACCAATAAGGCTTCATCCACAAGCCTAACTAGTACCCAGCCAACCAAGACGTCAGGCGTGCCCTCAGGGTTTAATTTTACTGCCCCCCCGGTGTTAGGGAAGCACACGGAGCCCCCTGTGACATCCTCTGCAACCACCACCTCAGTAGCACCACCAGCAGCCACCAGCACTTCCTCAACTGCCGTTTTTGGCAGTCTGCCAGTCACCAGTGCAGGATCCTCTGGGGTCATCAGTTTTGGTGGGACATCTCTAAGTGCTGGCAAGACTAGTTTTTCATTTGGAAGCCAACAGACCAATAGCACAGTGCCCCCATCTGCCCCACCACCAACTACAGCTGCCACTCCCCTTCCAACATCATTCCCCACATTGTCATTTGGTAGCCTCCTGAGTTCAGCAACTACCCCCTCCCTGCCTATGTCCGCTGGCAGAAGCACAGAAGAGGCCACTTCATCAGCTTTGCCTGAGAAGCCAGGTGACAGTGAGGTCTCAGCATCAGCAGCCTCACTTCTAGAGGAGCAACAGTCAGCCCAGCTTCCCCAGGCTCCTCCGCAAACTTCTGACTCTGTTAAAAAAGAACCTGTTCTTGCCCAGCCTGCAGTCAGCAACTCTGGCACTGCAGCATCTAGTACTAGTCTTGTAGCACTTTCTGCAGAGGCTACCCCAGCCACCACGGGGGTCCCTGATGCCAGGACGGAGGCAGTACCACCTGCTTCCTCCTTTTCTGTGCCTGGGCAGACTGCTGTCACAGCAGCTGCTATCTCAAGTGCAGGCCCTGTGGCCGTCGAAACATCAAGTACCCCCATAGCCTCCAGCACCACGTCCATTGTTGCTCCCGGCCCATCTGCAGAGGCAGCAGCATTTGGTACCGTCACTTCTGGCTCATCCGTCTTTGCTCAGCCTCCTGCTGCCAGTTCTAGCTCAGCTTTCAACCAGCTCACCAACAACACAGCCACTGCCCCCTCTGCCACGCCCGTGTTTGGGCAAGTGGCAGCCAGCACCGCACCAAGTCTGTTTGGGCAGCAGACTGGTAGCACAGCCAGCACAGCAGCTGCCACACCACAGGTCAGCAGCTCAGGGTTTAGCAGCCCAGCTTTTGGTACCACAGCCCCAGGGGTCTTTGGACAGACAACCTTCGGGCAGGCCTCAGTCTTTGGGCAGTCGGCGAGCAGTGCTGCAAGTGTCTTTTCCTTCAGTCAGCCTGGGTTCAGTTCCGTGCCTGCCTTCGGTCAGCCTGCTTCCTCCACTCCCACATCCACCAGTGGAAGTGTCTTTGGTGCCGCCTCAAGTACCAGTAGCTCCAGTTCCTTCTCATTTGGACAGTCTTCTCCCAACACAGGAGGGGGGCTGTTTGGCCAAAGCAACGCTCCTGCTTTTGGGCAGAGTCCTGGCTTTGGACAGGGAGGCTCTGTCTTTGGTGGTACCTCAGCTGCCACCACAACAGCAGCAACCTCTGGGTTCAGCTTTTGCCAAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126883-NUP214:NM_005085:28
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=NA C2=0.696
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATAATCACACCAACACCGT
R:
AATCATCTGCTTGGCCAACCC
Band lengths:
358-2279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)