MmuINT0111944 @ mm10
Intron Retention
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:32031250-32034969:+
Coord C1 exon
chr2:32031250-32031308
Coord A exon
chr2:32031309-32033202
Coord C2 exon
chr2:32033203-32034969
Length
1894 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TGGTTTCTTTTTCTTGCTAGGGG
3' ss Score
8.62
Exon sequences
Seq C1 exon
GACCTTTACTTTTGGGACAATCACACCAACCCCATCTTCTAGTTTCACTGCCACACCAG
Seq A exon
GTACAGTCCCTGTGTTGCATAGTGTTCTCTTGTGTTCCCCTCATGGGAGAAGTGCTGTACGTGACTGTGTGCTTTCTTTGTAACTTGTGGCTCTTCTTCAGTTGGTACAGTCAGGTTGGTAGTGATGATGTACATCAGAGACATGTTGGAGGGCTGAGAGTGGCTTGGTGGTGGGGCACCTTCCAGCACACAGGACACCCTGGCTTGAGTTCATAGCAGCAGGGCAGTAGCAGAGTGTGTAACCCAGAGCTTGATGTGGGGCTGCTGAAAAGGCTCAGCACCTGGACGAGGCCAAGCATCTCAGTGTCATTCCTGGGACCCACGTGGTAGAAGGAGAGAACTGACCACTGAAGTCATCCTCTGCCTGCACATTGTCTGTAACATGCAAACAACACAAATAAAATATTTTAATGCAATAATTTTTTTAAAAGAACTTGTTGTGAAAGAGATCTGTTTACATAACTATAAAGAGGAAAAAGACTTGCTTCTCAAAGCTTCATTTGCTGTAACATTCTAATGTTAACACACAAACTTGGTCCCAACAAGAGGTGGGCATAGTACCATGAAGTAAATGATCAAACTTGGTCCTCAACACTGGTACACATACCTGTGCTAGGAACCCAGACCCATCCAAAGACAACAGCTTTGTCACATTCCTCCAAGCTCTCTAAGTAATGAAATCAAGGAAGCCTTTACTGTGATGTGTTTTTAATTAGGAAATTTTGAGATATAAACCGTATGATGGAGTTTGAATCACTCTATAGCAGCCGTTACAGTTCTGTTGCATTTCCTTTGCAGAGTTTTGTCTTTAGCAAGTTCTCATGTAACCTCATGTCTTCTGTCACCTTTGCTGGGTCTGCTGACTCAGGCTTAGAATCTCGGCTATATAGAGGCTGAGAGAGGAAGCTCTCAAATTTAAAGCCTGTCTAGGCTGAAGAGTTGGTCCAGGCCAGCCTGGGCAACTTAGCACTGGACTTCCTCTAAATAAAAGTAGAAAGGGGCCTGGAAGACGGAGTGCAACTCTGGAACACCTGCCAGGCATAGGCAAGATCCTGCCTGTCCAGGGCTCAAGGGTCTCTCCCGTGGCTTTGCTGTGCTTTGTCGTCTGTCTGCTTTTCTTGAGTGTACTTTTGGGCTATACATATGATAAGTAAGACATCAGTCATCTTTAGTTTTTCAATCAACAAACCTTTTCTAATGTGTGCTGGGAATAGAACTTAATGCTTTGTATTTAACAAATCTTTTTTCAAAATTTTATTATGAGACATGGTGTCACCGTTACTTTGAGAAGCAAGTCTTAAGGAAATAAAAGTCAGGATGAGATGCAGCAGTAATCCTACATCAACTCTGAATCAGTACAATAATGGGTACCAACCCAAAGGCCATAAACAACATCACTAACAATATAATGCCATCTTCAGCAGGACCCTACTAAACAGATTAATTGCAGTAAAAATTATCATCTGGGTTGACACTCTGACCTTAAACGGCGAAGAGCTTTCAGTCTGGGTCCAATTGGGCTATGAGGATTACCCATACATTAGCTGATACCAAGAGTAGGAGGGAAGCCCTTACCCAGGGCACTGTGTTGAGAGCAGTCTCTTTGGGGACAATGTGTCCATTCCATGTCTCCGAGATGTCACACGTTTGTTGTGATGTGGTGATCATAAACAGAATCTTCATTCCTTCCCACTTGAGAGCTGACTCTGGGAGTGCTAATGTTCCTGTGCAGAGCAAGCGGTCATCCTGCCCTTTCACAAGAACTCTGCCATTAGAACCATACGTTTCGTCCCTGACTGAAGAGAAAGATTGCCTGAGAAGGGCAATCAGTACAAATGTGATGAATTCTATTTTGCTAAATCCAACTCTTTTCCTGGTTTCTTTTTCTTGCTAG
Seq C2 exon
GGGCAGGACCCCCTACTAAAGAGCCAACCCAGCTTGAGGCATTCTCATTTGGCGGGGGAGGCAAACCTTTCTCTGAGGCCATTCCTGGGAACTCCCCTGCCACAGGAGCAACATCGGCACCCAGCACTTCTGTAACAGCTGCCTCTCTGGAAGACTCTGCTCCATCCAGCAGCAAACCTGCAGCTCCTCCTGAAACTACTGTGTCCTCTGCTTCTAGCAAATTGGAAACTCCACCGTCCAAGTTAGGAGAGCTTCTGTTCCCAAGCTCTCTAGCTGGAGAGACGCTGGGGAGCTTCTCGGGCCTGCGTGTTGGCCAAGCTGAGGATTCTACTAAGCCAGTTAGTAAGGCCTCCTCCACAAACCTAGCTGGAGCCCAGCCAGCTAAGCCCTCAGGGGTTAGCTTTCCTAATACTTCAGTGTTAGGGAAGCCAGTGGAGCCCGCTGTGACCTCCTCTGTGAGCCCCGCCCCAGCAGCACCAGCCTCAGCTCTGAATGTGAGCACTAGCAGTTCCTCAGCAACTGTCTTTGGCAGTGTGCCCCTTACCAGTGCTGGACCTCCTGGGCTCATCAGTTTTGGTGGGGCTGCTTTGGCTAGTAGCAAAGCTAGTTTCTCATTTGGAAACCAGCAGACTAGTAGTAGTACAGCATCATCAGCTACCCCAACATCGACCTCAGTTGCCCCTTCCCTTCCAGCATCTTTCCCTACTTTGTCATTTGGTGGCCTCCTGAGTTCACCATCAGCTTCTTCCCTGCCCGTGTCCTCTGGTAAGAGTACAGAGGAGGCAGCACCACCAGCTGTTCCTGACAAGTCAGACAGCAGTGAAGTTTCAGCAACAACACCCTCACTTCCAGTACAGCCACAGTCAACCCAGGCATCTCTGCAAACTTCTGACCCTGTCAAAAAAGAACCTGTTCTTGTGCAGACCACAGACAGCAGCCCCAGCAGACCAGCATCTTCTGCCAGCTTTGTGGCATCCACAGAGTCCATGCCAGTAACCCTAGGGGCCCCTGACAGCAAGATAGAGGCAGTGTCTCCTGCGTCCACCTTTGCAGGGCCTGGACAGGCTGCTGTGGCAACAGCTGTTCTCCCAGGAGCAGGCTCGGCAGCCACTGAAGCATCGGGTACCCCTACCACCTCCACTGTCTCCAGCAGTAGCCCAACTTCTGCCACAGAGACAGCTGTATTTGGGACTGCCACATCTGGTTCCTCAGTCTTTACACAGCCACCTGCTGCCAGTTCTAGCTCAGCGTTCAGCCAGCTCTCCAGTAACACAGCCACTGCGCCCTCTGCCACCCCTGTGTTTGGGCAAGTGGCAGCCAGCATAACCAGCACAGCCGCTGCCACACCACAGGCCAGCAGTTCAGGGTTTGGCAGCCCTGCATTTGGTGCTTCAGCTCCTGGAGTGTTCGGACAGACAGCATTTGGGCAGACCCCAGCCTTTGGGCAAGCAACAAGCAGCCCTGCCAGTGGCTTCTCCTTCAGCCAGCCTGGGTTCAGTTCCGTGCCTGCTTTCGGCCAGTCTGTCTCCTCTACCCCCGCATCCACCAGTGCAAATGTCTTTGGAGCCACCTCGAGTACCAGCAGTCCTGGTTCCTTCTCATTTGGACAGGCTTCTACCAATACAGGAGGGACGCTGTTTGGTCAAAACAACCCTCCTGCTTTTGGTCAGAGCCCTGGCTTTGGGCAGGGAAGCTCTGTGTTTGGTGGCACCTCGGCCACTACCTCTACAGCAGCACCTTCAGGGTTTAGCTTTTGTCAAGCCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855:ENSMUST00000065398:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=0.689
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGTTTCACTGCCACACCA
R:
GAATCCTCAGCTTGGCCAACA
Band lengths:
350-2244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types