HsaINT0117564 @ hg19
Intron Retention
Gene
ENSG00000171102 | OBP2B
Description
odorant binding protein 2B [Source:HGNC Symbol;Acc:23381]
Coordinates
chr9:136081304-136081803:-
Coord C1 exon
chr9:136081702-136081803
Coord A exon
chr9:136081328-136081701
Coord C2 exon
chr9:136081304-136081327
Length
374 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
GTTTTTCTTGGTCTCTGCAGGAA
3' ss Score
10.64
Exon sequences
Seq C1 exon
GTAGGAATTCTGATACCAACCGGGAGGCCCTGGAAGAATTTAAGAAATTGGTGCAGCGCAAGGGACTCTCGGAGGAGGACATTTTCACGCCCCTGCAGACGG
Seq A exon
GTGAGGATGGCTGTGCCCAGTCCCCTGTGTCCCTCTGCTGTGTCTGTCTGCTATCTCCAGTGTCCCATGACCCCCATGTCCTCCCATGTCCCCCGCATTCCCCGTGTGCCCCGAGTCTCCTCGCAGGGGCTCCCGGGCCCTGTTTAGCGTCCTCCTCATTGGAGGCTCTGTGCTCTGGGCTGCGATGGGGTCTGGGGCTCCGCGCTCTGGGCTGCGATGGGGTCTGGGGCTCCGCGCTCTGGGCTGCGATGGGGTCTGGGGCTCCGCGCTCTGGGCTGCGATGGGCTCTGGGGCTCTGAGCTCTGGGCTGCGATGGGGTCTGGGCCCTGGTCTAGGGCGCCTTCTAATCCCTGGGTTTTTCTTGGTCTCTGCAG
Seq C2 exon
GAAGCTGCGTTCCCGAACACTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171102-OBP2B:NM_014581:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(24.5=100)
A:
NA
C2:
PF0006118=Lipocalin=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)