MmuINT0090248 @ mm10
Intron Retention
Gene
ENSMUSG00000062061 | Obp2a
Description
odorant binding protein 2A [Source:MGI Symbol;Acc:MGI:2387617]
Coordinates
chr2:25702177-25702753:+
Coord C1 exon
chr2:25702177-25702278
Coord A exon
chr2:25702279-25702729
Coord C2 exon
chr2:25702730-25702753
Length
451 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GCTTCTTTTTGTTTCTACAGATA
3' ss Score
10.64
Exon sequences
Seq C1 exon
GGAGAGACTCTGGTGAAAATCCAGAGGCCATGGAAGAATTTAAGAATTTCATAAAGCGCATGAATCTCCGACTGGAAAACATGTTTGTGCCAGAGATCGGAG
Seq A exon
GTAAGAGCAGGAATGCCCATGCCTCTCTCTGTCCCCCAGGACTGTCTGTCTCCAGCCCACATCCTGTCTGTGTGGGTGCCTTCTGTGTCCTCTCTGTGCCTGGTCCTGTTGTCCCTTACGTGTTATTTCATATCTCTCCATGTCCCCTGGGTACCTCTGTGGTATTCCCACTATGCCCCTAGTGTCACCCATAACTAAAAGGGACATTCTGTCCCTGTGTCCCTCTGTATCCCCATGACCTCCAAATCTCCTGTGCTTCTGCTTCAGTGTCTCCCCAGGTCTCTTTGTGTCCCTGGCTTCTGTATTGTCTGTCCCTTCAAGGTCCTTCCCCTCTCACTGGGACCTCAGGCCTCTGCTTCAGATCTTGGCTGTGGGAGGGTCTGAGCTGCAGGTGTGATGGGGTCCTCTTACAGAGCCCTTCTCACTCCCAGGCTTCTTTTTGTTTCTACAG
Seq C2 exon
ATAAATGTGTTGAAAGTGACTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062061:ENSMUST00000077667:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(24.3=100)
A:
NA
C2:
PF0006118=Lipocalin=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types