HsaINT0118133 @ hg38
Intron Retention
Gene
ENSG00000138315 | OIT3
Description
oncoprotein induced transcript 3 [Source:HGNC Symbol;Acc:HGNC:29953]
Coordinates
chr10:72930538-72933033:+
Coord C1 exon
chr10:72930538-72930637
Coord A exon
chr10:72930638-72932353
Coord C2 exon
chr10:72932354-72933033
Length
1716 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AGTCGTGATCATCTCTTCAGGAA
3' ss Score
6.7
Exon sequences
Seq C1 exon
CTGTGTTTCAGATGACTCGGTAAAGCAGTACACATCCCGGGATCACCTAGCAAAGCACTTCCAGGTCCCTGTCTTCAAGTTTGTGGGCAAAGACCACAAG
Seq A exon
GTGAGTTGAACATCTTTAATTTATAACCCCTGAACCTGAGCCTTTTTTTTTTTTTTTTTGGTGTCCCAGTGTGTTGACATTCCAAGAGCCCACTGGTGGGATCTGCATGGGCTCAAGAGAAAAACAGAGAAACTGGCCATCGAGAAGCTTAACCCTTTCATGCATGTCACACCCGCCCTGCCTGCCAAAATAACTGTGCTGTTCCCCTCATACCACCTGCCAAAATAACTGTGCTGTTCAAAGAAAATACTATAGGATCATAATTTAATTTAAAATCTTTGTGGGCAGTTATGGTTGAAAAGCCAGTGTGGTGATTGGTCAAATGGCAAGGGATATGGACAGGAAATTCACAGAAAAGACAAATAGTGAAATGTTCACTGAAAATAGTACTTAAGTGCTGATGAAAACAATTATAAGACACCATTTTATACATATTAAATTTATGAAAATTATAAAATACAACACTTACAAGGTTATAGGGAGAAGTATACAGTGACAGTGTAAATTAGTACATTTGCTGGAACATTGTCTGATAATCTGTAATAATAATCATAAAATCGTCATATTCTTTTATCTAAAAATTCCAATTCTGACAGTTTCTTAAAAACAAAACAAAACAGAGGCAGGAGAATTGCCTGAAGCCAGGAGTTTGAGACCAGCCTGGGCAACATAGCAAGACCTCTACTCTACAAAAAATTTTAAAATTAGCTGGGCATAGTGGCACACACCTGTAGTCCTAGCTTACTTAGGCAGCTGAGGCAGGTCACTTGAGCCCAGAGTTCAAGGTTACAGTGAGCTATGATCAGGCCACTGCACTCCAGCATGGGTGAGAGAGTGAGACCCTGTCTCTAAAAACAAACAAAACAAATTTTTAAGCCAAAACAGACAAGGTGTATTGGAAGTGTTTGTAGAGCATTGTTACAAGGGGGTAAAAGAAAAAGCCCCAAACAAGCAGGGCTAAGGGCCACAGTATATCAATTTAATGCAATATTAAGAGTTATTAAAATGATAAATATGGGAAAAGCAGACATAAAAACTGTTGTCATAACAATTTACAGGCATATTAAATATATTACATTTAATGTAGTGAGATAAGCTGGAAGATTTTTTATCATTGTTGTTAGAGTGTACTTGTTGAAACATTTAAACAAAAGGAAGTTGAAGAGGCCAACATTCTTTTCCACACTGCTTGTAAGTATATGCATGTCCATCCCAGCTATACCATGGTTACAGAACAACTGCTAACAATGATGGCTGATCCTGATTGCCCTCAATCAGGCAGGAAGCTCAGGCAGTTACCTACAGAAAGGTGCTTGCAGAAAACACTGGTTATTTGACAGCACAAGTGCATGGGAGCCAATGCTATCCCCAGACCTTGGTGTGAAGAAGGAAGATGCTCAAGTTAGTAGATGTTGCTTCACAAAGGTCTCTTCTGTTCCAGCTCCATGCAGGAGTTATGAATGTGGGTTTTTTTAATCACTCATGTGACTTAAATGCAAACTTTGCCACATTTTTTATTAAATGTGTACATTTGGGCAAGTTCCTTAACCTCTCTGTTTCCTTATCTGTAAAATGGGGATGATAAACTCTACTTGTGGATGTCCTTGTTAAGATTACATGACTTAATGTTTAGGAACATTTAGTATTGTGTCTTGTAAGTGCCCCACAAGTGGCAGCAGTTATTGTTTTTATTAACAGTCGTGATCATCTCTTCAG
Seq C2 exon
GAAGTGTTTCTGCACTGCCGGGTTCTTGTCTGTGGAGTGTTGGACGAGCGTTCCCGCTGTGCCCAGGGTTGCCACCGGCGAATGCGTCGTGGGGCAGGAGGAGAGGACTCAGCCGGTCTACAGGGCCAGACGCTAACAGGCGGCCCGATCCGCATCGACTGGGAGGACTAGTTCGTAGCCATACCTCGAGTCCCTGCATTGGACGGCTCTGCTCTTTGGAGCTTCTCCCCCCACCGCCCTCTAAGAACATCTGCCAACAGCTGGGTTCAGACTTCACACTGTGAGTTCAGACTCCCAGCACCAACTCACTCTGATTCTGGTCCATTCAGTGGGCACAGGTCACAGCACTGCTGAACAATGTGGCCTGGGTGGGGTTTCATCTTTCTAGGGTTGAAAACTAAACTGTCCACCCAGAAAGACACTCACCCCATTTCCCTCATTTCTTTCCTACACTTAAATACCTCGTGTATGGTGCAATCAGACCACAAAATCAGAAGCTGGGTATAATATTTCAAGTTACAAACCCTAGAAAAATTAAACAGTTACTGAAATTATGACTTAAATACCCAATGACTCCTTAAATATGTAAATTATAGTTATACCTTGAAATTTCAATTCAAATGCAGACTAATTATAGGGAATTTGGAAGTGTATCAATAAAACAGTATATAATTTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138315:ENST00000334011:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(13.2=100)
A:
NA
C2:
PF0010018=Zona_pellucida=PD(10.4=45.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCACTTCCAGGTCCCTG
R:
GTTGGTGCTGGGAGTCTGAAC
Band lengths:
355-2071
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development