MmuINT0113049 @ mm10
Intron Retention
Gene
ENSMUSG00000009654 | Oit3
Description
oncoprotein induced transcript 3 [Source:MGI Symbol;Acc:MGI:1201782]
Coordinates
chr10:59422958-59425476:-
Coord C1 exon
chr10:59425377-59425476
Coord A exon
chr10:59424113-59425376
Coord C2 exon
chr10:59422958-59424112
Length
1264 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GACTGTCCTTATCCCTTCAGGAG
3' ss Score
9.59
Exon sequences
Seq C1 exon
CTGTGTTTCCGATGACTCAGTAAAGCAGTACTCATCCAGGGACCACCTAGCAAAGCACTTCCAAGCCCCCGTCTTCAAGTTTGTGGGCAAAGACCACAAG
Seq A exon
GTAAGCTGGATGCCCTTTGTCCCACAACCCCATGCCTGAGCCTTCCTTCTTATTGCCCTGGTGCACTGACATTCTAAGAGCCTGTGGTTAGCTTCTGCACAACCTCTGGGAGAATATAGTTAAACTCTGGATTCACACAAATTACAATTGCCTGCCCCTCACCACACCCACATAAAGTGGCTGTGCACAAGGAATATCATAGGACCATAATTTGGAATCTTTGTGGGCAGATTAATGTAAAACGCCAGTGATGCCGTCAGTTCAACAAAGGATTTAGACAGGAATTTCATGGAAAGACAGCCCAGGAATGGGAAGAGAGTAGAACCCAGAATGCTAATCATAGGACATAACTTCATAATAGGGAGTGTCCTACATGGAATGTATGGGAAACTACAAATTACGAGGCCTTCTAAGCCATAGGAACTGAACAACAACAGCATAAATTTGATATATATTTTTAAATTAAGTTACCTGGCAGTATGCCACAGTCATTAACTTCGCACATGATTTTTGGCTAAATACACTTTTGGCGATCTCACAGAAACAGATTATGTTTTAGAGTGTGCTCTTAAGAGGGCAAAAGGGGGGCCTCAAATAAACACAGCCAAGGGGCCACACTATCAGTTTAATGGGACATTAAGCAGTCTTTAAAATTATGAACATGAGAAAAGCAGGGGTGAAGAAAGTGTCCTAACAGTGTCCTAACAGGGTACACGGGGGTCAAGCTGACAAGAGGCTGTCCCAAGAGGCTGTCCCAAGAGGCTGTGGGTGACAAGATGGATCCCTTTTGCTGCTGTTGGCAGTATTGAAACACAGCTCAGGTCAAGCTTTACAGAGCAAGGTTCTTTCCCATAACGCCTCTAAGTGACCTTTGCAGCCATTTGTTATTCCAAAACTCCAGTTGAGTAACTGATCCTGGCCTAGCAGACCCTTCTGAAAAAGACTTCTTTATGAGCACTGGGCCCCAGCACCCCTCCCAGTCCAGAGGACTAAAATGCTAAGGCACAGGACACTGCTCCCCTAAAGTCTCTTCAGCGTATCAGAGTTATAGTGCTAGGTTTTGAGGTCACCCATGTGTCTCTGTTCCTTGTGGCCACATTCTTAATGTGTGGACTGGGCAATTTCCTTATCCTAAGCCTTGGTTTCCTGTCCATAAATATAAGATTGTCATTGTCACCTCTAGTTGGGGCTTGTGAACTGAGAGGTACTGTGTTGGCTCTCTGCTGTCGCCTACAGTGACAATTGACTGTCCTTATCCCTTCAG
Seq C2 exon
GAGGTATTTTTACACTGCCGCGTCCTTGTATGTGGGGTGCTGGATGAGCGTTCCCGCTGTGCCCAAGGGTGCCACCGAAGAGTACGTCGTGAGGTGGGTGAGGACGAGGACTCTGCTGGGCTGCAGAGCCAGACACTGACAGGTGGCCCCATCGCCATCGACTGGGAGGACTAGTTCCTGCTTCTTCACTTCCAGCCGTCCTCCCCTCTAGAACGACTTCCTGTGTCCTCAGAGACATCAGAGAACCTCCTAAGACAGCTGGCTTCTTTAAATCATGTACTGTGAGTTTAGACAACCCCACCCCATGAAAGGACTGGCTGGCTGGTTTTGTCCCTGAGTTCGTCCAAATCACGGCACTGCTGGCCCGTGTGCCTAGGTGGGCCTCAGCTTCTGGACTCAAAGATTTGTGTTTTTCCTCAGGGAAGGACACCTCCCTCATTCTCCCTGTTCCTTTCTTACAACGAAATACCTCGTTTGTGGTGTAACTGGGCCACTAATATAAGGAGCTGGGAATGTCATTCCAAGTCAAAACCCTAAAATAATGAATGACTAAGAGCATAACTCATGATCTCCTAGATACCTAATAATTGTGACCTAAAATCTCAACCCCAGTATAGAGTATTTAAAGGGGATTTGAAAGTCTATCAATAAAATAATGTGTAACAGGAAACACAATAGGTTGAACGTCACATAGTACTTTTTAGTGTTTTCATATTGCCTGGATGAAATGTTTTCACCTAAAAATAATTCATAAGGTGCTTAAGGGCACTGGCTGCTCTTGTGGAGGACCCGGGTTCAATTCACGGCACCCCGTTGTGGTGGCTCACAACTGTCTGTAACTCTGTCCAGGGATCCAATGGCCACTTCTGAACTCCCCAGGCACGGGACATGCATATGCTACATAAACACACATGCAGGCAAACCACTCATACATCTAAGTAAAATAAATTAATTTTTCAAACTATCAGAATGCACATAAGTAATTCAATGGCTATACTATAAGCAAAACTAAATTTTGGCTCCATATACCCAGAATATCAGTATTCTGTGCCCTGGGTTAGATAAGACAATAGGAAAAGGTATATATACAATTATGTCATACTCTTACTTTGTAGGTGCTCAATAAATTTTATTGAAATAAATACCATAAACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009654:ENSMUST00000009798:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(13.2=100)
A:
NA
C2:
PF0010018=Zona_pellucida=PD(10.4=44.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCCCGTCTTCAAGTTTG
R:
TGGGGTGGGGTTGTCTAAACT
Band lengths:
343-1607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types