HsaINT0118196 @ hg19

Intron Retention

Gene

ENSG00000173391 | OLR1

Description

oxidized low density lipoprotein (lectin-like) receptor 1 [Source:HGNC Symbol;Acc:8133]

Coordinates

chr12:10319311-10321774:-

Coord C1 exon

chr12:10321673-10321774

Coord A exon

chr12:10319557-10321672

Coord C2 exon

chr12:10319311-10319556

Length

2116 bp

Sequences

Splice sites

5' ss Seq

AATGTAAGT

5' ss Score

8.62

3' ss Seq

TTAATGCAACTGTGATTCAGTAT

3' ss Score

2.57

Exon sequences

Seq C1 exon

GTCTTCAGTTTCTTTACTCTCCATGGTGGTGCCTGGCTGCTGCGACTCTAGGGGTCCTTTGCCTGGGATTAGTAGTGACCATTATGGTGCTGGGCATGCAAT

Seq A exon

GTAAGTGCTAAAATACGGAACTGATGTTTATTGGGGCAGGGGTGTTGGAAATGAGGTTAATAAATATGGTTTATAAGTTTCTTTCATAACAACTACAAACAGCCTTGATATAGATTCATTTTAGGCAAAATGTTTTTAAGAGTGACCATGAAAATAAAGGGGTATATTGTTCATCTTCCAATGGATAGAGCCATGAAATAAAAATTACAATTGGTAGGCATTTTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTCTTTTGTTTTCATAACTTCATGGATAGGCCGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGACCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAGTAGCCGGGTGTGGTGGCACATGCTTGTAATCCCAGCTACTCAGGAGGCTGAGGTAGGAGAATAGCTTGAACCGGGGAGGTGGAATTTGCAGTGAGCTGAGACTGCACCATTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATTTCAAACAAAACAAACAAACAAAAAACCAACCTCATGGATAGAGCCTATTTAAATTCTAGAATGATGGAGAAGATAATAACTTAAAGTTACTAATATCCAAGATCATCTGAGAGGCCCAAAAGTAAAAGAAATTTTATTTAGCTTGCTGAGTTTTGATAGAGATAATTAAATACCATTTTAATGTTAAGAACCAGAAACACAATCTTAATAAATAAAACATTTAAAATAAAATATATTTCACATTTATAATAAGAGCATTTAGAAAAGAGAAGATATTGAGGGAAAAAAAGAAGTGAAAAGATGGCCCAGAGTGGCCAAGAAGGAAAGAAAATGGTGCCCAACGTTCACCTGAACTGCCTGTGAATTTAGGTTGTAGAACTGAGTTGTTTAGGCTACCCAGGATCCAGGTTATTATGGCCATTGAAGTGCTATTTGCTTCCTAACTGTTGTTCAAGCTCACAAACTATTTTATTTTAAATTTGTAAATACTTAGGGCCTTTCCTAGTGACAAGGAGAAGTGCCCTTGACTTAGTGGTGGTGACCAGAAAAATCTTTTGAGCCTTTGATCATCTTATAACAGGATCAAAGCTGCCTTCAAACCAAGCGGTCTGCTTTGTATTGCACCATCAAAATTCAGGAACTGAGACATTTGACCCTTAACATGTTATCGCCTGCTTGATTTCACAACCTTCACTTTATCTTCACCCTTCCTAAAATGTACCGTGGCCAAGGGGAAAAAAAAAAGAAAAGAAAAAATTCTTGGAGACTCTTGTGACACAGTGTGCGTGGCTGTCTCAAAAAAGGGGTGTATGTCACAGTTCTTAAAATTAGGAAGTCTGGAAGAGTAGACAGAATGGGAGGAGACACAGCAGAGGAATTGAGACATAAATAGAGTAAATCGCTAATGACATTTCCTACTAATAGTCACTGAGTCTGGTGGGTGTCTGTTTCAGGTTTTCCTTATTTTATTTATTCTAATGCTGTACTGGTTATCTTGTGATTACTTTTCATTTGTAACTCAATAAAAAAAAATCTTGGGTTTTTTTTGTTGTTGTTGTTGTTTTTTATTTTTTTTGAGACAGTCCCCCTCTGTCGCCAGGCTGGAGTGCAGTGGCACTGTGATTCCCCTGCCTCAGCCTCCTGAGTAGTTGGGACTACAGGCGCGTGCCACCACCCTCAGCTAATTTCTTTGGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCTATCTCTTGACCTCGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGACCTGAGCCACCGTGCCTGGCCAAAATCTTGGTAATTTTTAAAAAAATTACAAGTGTTTGCAATGTTCCTGACATTAAACAAAATACTGCAGGAATATTCAAGAACCTCCAAATCTGTAACTTCTGAGTAAATCTGGGTCATTTTTCAGCAGCTTATCTATTGTCAAAATAGATTTAATTCTGTTTTGATTTCCTCAAAAAGTCCCTGGAGGGATTTTTATTTGGATTAGAACTAGAGTCTTAATGCAACTGTGATTCAG

Seq C2 exon

TATCCCAGGTGTCTGACCTCCTAACACAAGAGCAAGCAAACCTAACTCACCAGAAAAAGAAACTGGAGGGACAGATCTCAGCCCGGCAACAAGCAGAAGAAGCTTCACAGGAGTCAGAAAACGAACTCAAGGAAATGATAGAAACCCTTGCTCGGAAGCTGAATGAGAAATCCAAAGAGCAAATGGAACTTCACCACCAGAATCTGAATCTCCAAGAAACACTGAAGAGAGTAGCAAATTGTTCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000173391-OLR1:NM_002543:2

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.349

Domain overlap (PFAM):

C1:

PF083915=Ly49=PU(22.0=80.0),PF108283=DUF2570=PU(25.0=74.3),PF145841=DUF4446=PU(23.3=68.6),PF043759=HemX=FE(22.5=100),PF148511=FAM176=PU(21.4=62.9),PF078897=DUF1664=PU(24.3=74.3),PF055297=Bap31=PU(17.4=45.7),PF130941=CENP-Q=PU(1.6=5.7),PF0149614=V_ATPase_I=PU(6.7=25.7)

A:

NA

C2:

PF083915=Ly49=FE(64.6=100),PF108283=DUF2570=PD(74.0=92.8),PF145841=DUF4446=PD(75.7=94.0),PF043759=HemX=FE(54.3=100),PF148511=FAM176=PD(77.7=96.4),PF078897=DUF1664=PD(74.8=96.4),PF055297=Bap31=PD(81.5=90.4),PF130941=CENP-Q=FE(66.7=100),PF0149614=V_ATPase_I=FE(61.2=100),PF054737=Herpes_UL45=PU(17.2=12.0)

Main Inclusion Isoform:

ENSP00000438744