HsaINT0118196 @ hg38
Intron Retention
Gene
ENSG00000173391 | OLR1
Description
oxidized low density lipoprotein receptor 1 [Source:HGNC Symbol;Acc:HGNC:8133]
Coordinates
chr12:10166712-10169175:-
Coord C1 exon
chr12:10169074-10169175
Coord A exon
chr12:10166958-10169073
Coord C2 exon
chr12:10166712-10166957
Length
2116 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TTAATGCAACTGTGATTCAGTAT
3' ss Score
2.57
Exon sequences
Seq C1 exon
GTCTTCAGTTTCTTTACTCTCCATGGTGGTGCCTGGCTGCTGCGACTCTAGGGGTCCTTTGCCTGGGATTAGTAGTGACCATTATGGTGCTGGGCATGCAAT
Seq A exon
GTAAGTGCTAAAATACGGAACTGATGTTTATTGGGGCAGGGGTGTTGGAAATGAGGTTAATAAATATGGTTTATAAGTTTCTTTCATAACAACTACAAACAGCCTTGATATAGATTCATTTTAGGCAAAATGTTTTTAAGAGTGACCATGAAAATAAAGGGGTATATTGTTCATCTTCCAATGGATAGAGCCATGAAATAAAAATTACAATTGGTAGGCATTTTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTCTTTTGTTTTCATAACTTCATGGATAGGCCGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGACCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAGTAGCCGGGTGTGGTGGCACATGCTTGTAATCCCAGCTACTCAGGAGGCTGAGGTAGGAGAATAGCTTGAACCGGGGAGGTGGAATTTGCAGTGAGCTGAGACTGCACCATTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATTTCAAACAAAACAAACAAACAAAAAACCAACCTCATGGATAGAGCCTATTTAAATTCTAGAATGATGGAGAAGATAATAACTTAAAGTTACTAATATCCAAGATCATCTGAGAGGCCCAAAAGTAAAAGAAATTTTATTTAGCTTGCTGAGTTTTGATAGAGATAATTAAATACCATTTTAATGTTAAGAACCAGAAACACAATCTTAATAAATAAAACATTTAAAATAAAATATATTTCACATTTATAATAAGAGCATTTAGAAAAGAGAAGATATTGAGGGAAAAAAAGAAGTGAAAAGATGGCCCAGAGTGGCCAAGAAGGAAAGAAAATGGTGCCCAACGTTCACCTGAACTGCCTGTGAATTTAGGTTGTAGAACTGAGTTGTTTAGGCTACCCAGGATCCAGGTTATTATGGCCATTGAAGTGCTATTTGCTTCCTAACTGTTGTTCAAGCTCACAAACTATTTTATTTTAAATTTGTAAATACTTAGGGCCTTTCCTAGTGACAAGGAGAAGTGCCCTTGACTTAGTGGTGGTGACCAGAAAAATCTTTTGAGCCTTTGATCATCTTATAACAGGATCAAAGCTGCCTTCAAACCAAGCGGTCTGCTTTGTATTGCACCATCAAAATTCAGGAACTGAGACATTTGACCCTTAACATGTTATCGCCTGCTTGATTTCACAACCTTCACTTTATCTTCACCCTTCCTAAAATGTACCGTGGCCAAGGGGAAAAAAAAAAGAAAAGAAAAAATTCTTGGAGACTCTTGTGACACAGTGTGCGTGGCTGTCTCAAAAAAGGGGTGTATGTCACAGTTCTTAAAATTAGGAAGTCTGGAAGAGTAGACAGAATGGGAGGAGACACAGCAGAGGAATTGAGACATAAATAGAGTAAATCGCTAATGACATTTCCTACTAATAGTCACTGAGTCTGGTGGGTGTCTGTTTCAGGTTTTCCTTATTTTATTTATTCTAATGCTGTACTGGTTATCTTGTGATTACTTTTCATTTGTAACTCAATAAAAAAAAATCTTGGGTTTTTTTTGTTGTTGTTGTTGTTTTTTATTTTTTTTGAGACAGTCCCCCTCTGTCGCCAGGCTGGAGTGCAGTGGCACTGTGATTCCCCTGCCTCAGCCTCCTGAGTAGTTGGGACTACAGGCGCGTGCCACCACCCTCAGCTAATTTCTTTGGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCTATCTCTTGACCTCGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGACCTGAGCCACCGTGCCTGGCCAAAATCTTGGTAATTTTTAAAAAAATTACAAGTGTTTGCAATGTTCCTGACATTAAACAAAATACTGCAGGAATATTCAAGAACCTCCAAATCTGTAACTTCTGAGTAAATCTGGGTCATTTTTCAGCAGCTTATCTATTGTCAAAATAGATTTAATTCTGTTTTGATTTCCTCAAAAAGTCCCTGGAGGGATTTTTATTTGGATTAGAACTAGAGTCTTAATGCAACTGTGATTCAG
Seq C2 exon
TATCCCAGGTGTCTGACCTCCTAACACAAGAGCAAGCAAACCTAACTCACCAGAAAAAGAAACTGGAGGGACAGATCTCAGCCCGGCAACAAGCAGAAGAAGCTTCACAGGAGTCAGAAAACGAACTCAAGGAAATGATAGAAACCCTTGCTCGGAAGCTGAATGAGAAATCCAAAGAGCAAATGGAACTTCACCACCAGAATCTGAATCTCCAAGAAACACTGAAGAGAGTAGCAAATTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173391:ENST00000309539:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF039389=OmpH=FE(23.3=100),PF101864=Atg14=FE(22.4=100),PF083915=Ly49=PU(23.9=80.0),PF145841=DUF4446=PU(22.2=68.6),PF148511=FAM176=PU(21.2=62.9),PF041117=APG6=PU(16.3=57.1)
A:
NA
C2:
PF039389=OmpH=FE(56.2=100),PF101864=Atg14=FE(53.9=100),PF083915=Ly49=FE(70.1=100),PF145841=DUF4446=FE(75.9=100),PF148511=FAM176=PD(77.9=97.6),PF041117=APG6=FE(66.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development