HsaINT0118626 @ hg19
Intron Retention
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:16370]
Coordinates
chr7:24888688-24892253:-
Coord C1 exon
chr7:24892123-24892253
Coord A exon
chr7:24888796-24892122
Coord C2 exon
chr7:24888688-24888795
Length
3327 bp
Sequences
Splice sites
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
3' ss Seq
ACTATTTTAACATGTTCCAGGCC
3' ss Score
6.31
Exon sequences
Seq C1 exon
TTTACTTCACTTTAAGGTCAGCTTTTAATATCATGTCAGCGGAGAGAGAGAAACTGAAGCAGCTGATGGAGCAGGATGCCTCCTCCTCCCCGTCTGCTCAGGTCATTGGTCTGAAGAACGCCCTGTCATCC
Seq A exon
GTAAGTTACATGTCTGCCTCCAGGAATGCCTGAGATGTGTCCAGGCTCATGAATGGTTTGTAATTTCTATTTCCATGATTATGTTGAAAATTCAGGAGAAAACCAAATTATCCAAATTATATTCTAACCTTTCATCAAATCTGCTTATTTGAAACACCAAAACTTACCTATCCAAGTCTTAATAGCTAGTATTTTATTAAGTGATACCTTCTTTAAGTTTGGTTTCCTCTGACTGATCTTAATTTTTTTGTTTCTCTAACATTTTTATTGTACGTTTTTGTGTGTATGTGTGCGTGTCTTACAGACATTTTTCTGTTAATGCTTACAAAATCTGACAGTTTGGAGGAAATTTTATGGGCATGAGACACCACAAGCTTAGCCTTACTTTCCAAATGACAGGTGGCAGAGTGAAATTTCCAATTCATGCTCTTATCTTCCCTATTGCAAAGCACTGATCCTGTTTACCACTCTTTCAAAGACATGAGAGCTATTTTGTTTGATGGGATAGTACAAGACATTTAGCTTCCCTGCCCTGCCCCCCTACTGTGGCTACAAAGAGATGAGTCACATGAAAGTGCCTGTCAGGCAATCACTATACCTTCATAGTAACAGGAAAATCACTGACAGGGTCCCAAATGATTCTCAGCCATTGTCACTCATTCTCTCTCCTTTTTTCATCAGTTTCAATTAATTCCTCAGAATAGTTAGGCTCCATTAAAGTGCCATGTCCTACCTCTATTTGAATAAAGTTATCTCGTTTTTTTTTTTTTACCCTGAATCTATCAGGAGGCTAGAGAACTTTTGAAATAGCATACTGATTTGCTTTTACTCTTTTCTTGTACTTTGGAATTCCTACTTTAGAAAGAGAAAGAGTGTGTGCACATATGAAATTGCCATCTGAAGCAATACTGAATTTTCTATTTCAGGTCAGGTAGGGGAGATAAATTTTAGGATCTTGTAACCAGAAGCCAACACAGGCATTGAGAGAACTAGAAAATGTTGATTCATATTTTCTATTTATCGTATTGCCAAGAAAAGTGATGCTCTTAATATAATGTTAGTGATAAATCCTCTGCCAGTAGCACATATAGTTGTTGTAGAATATGTAAGGAGTATTCACTGATGGACCATTACAAGTATGCTATCTTCAAAAGAAATTAAAAATAACATTGGCTTGCTCCATATATAAAGAAGAGTCTTAACGTTGTCTTAAGGTCACAGATAGAATCGCCCCCTTTTTATTGTACAAGACAGCCATACACTGGTGCCATTTTGGTTTGAGAGAAGCAGAAGCAAAGTGTTTTTGTTTTTTTTCCCTAACTTTCTTATTGTTCTCATTAAGCTAGCTTTTAGTGCATTTACAAAAGGTATCTCTGATGGGCTTCCAAGGTCCCTCTCCCCATGATCTTCCTCTCCCTGCCTCCTCCCACAGAGGCCTGGCCTCATCTTGTCAATCTGCCTGTTTGGCCACTGAGACCTATTTGGCTGTGGTATCCTAGGCCAAGGCTGTTCTCACCTTCACTAAGGAATTCATTCTCACCCATATTCACGATTTTGGAAACTTCAGATAAAACCGAATGATCCTTTCTTTCCTTTTTGGCTTGGATTCACAATTGGGGTTTAAGACTTGTTTTTTGAAAATAAAATTTTTAGAACCATATCAGAGTTATCAGAATGGGTATGTCGGTGCTGTATGCACAGTGTTGCCATGTTTTCTTCTTCTGCCTGTGGCTTACAAAGGAAAGAAAAACTAATAAAATAGCACAATTTTCAGGCTGTACTAAGATTCTAGCCTCCCTACCTCTGTCATTGGCCAGAATAAAGTTAGTGCTCCAGAGAGACTGTTATATGTGGCTGTGTGATCTTAGCTCTTGTGCAGTTTTTCTTAAGTGGTCCTCAAGGATTTTCAAATAACCCATATGCTCTGCAGGGACTGAAAAACAAAGCCAGCATCCCTGTTGGAGATCCAGGTAGAGGATTAGGCAGTACCACATCCTTCTATGCTTTCAGCAGGTCGGTCCTGCAGGCCCTGGTGGATGCAAAAGGCTCAGAGCTTCTTAGAAAAGAGTCAGAAAGACAGACATATAGGCTGAATCTGCATGCGAGCACCCGTGGAGCTGATCGTGTGAGTGTCTGGGAAGACAGTCAGGAGAACTTGTCCCCCTTCCACAGACAGACCATTGGAGAAGAGTTGGTCATGAAGTGCACAGGAGTATCAGCGTGAAGGAAACAGCTTCCTTTACCTTTCAGCCACTTTCCTCCTAGTTGAGAGGTTGAGATAAGGAATGATCCCTGCCCAGGGAAATATAAAGGAGGCCTGGGGGCATAGTCTCAGATTTGCTTTTCATCTCACATTTACCCATTCCCAGAGCCATGGTCCTTAAGCCCTTATGCAGGTAAGTGAGGCTTACTCATTTCTTTTTTGAAATAGATTGCCTTAGTCCTGAAGAATGAATAGAACAATCAATACCCATATTGGAAAAGAGTAAAATTAATCTTTCACAAAGTCCTACTTCCCAGCACACAGCACACTTTCTTTATTTCTTTTTTTTTTTTTCGTGAGACAGGGTCTCACTCTCACCCAGGCCGCAATCTCAGCTCGCTGCAACATCTGTCAGCCTCCCAGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGTGTGCCACCATGCCCAACTAATTTTTGCATTTTTTGGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGTTCTCAAACTCCTGACCTCAAGTAATCTGCCCGCCTCCACCTCCCAAAGTGCTGGAATTACAGGTGTGAGCCACCTTGCCCGGCCTCCAGCACACTTTCTAAAATCTGATTCAATGGGTATGATAATTAAGTAACATTGAAATATGTCCAATCATAAGGGATGGGGCCAGCATATTCTTCAAAGCAGATAGAAGCCTGGATTCCTTAGGAAGGGATTTGGCCAAAGAGACTCCAGACAGTTGGGGAGGAGGAGGAGATGCTGTGGAACCACTGGTCTTAACAGAAGCCGACAGTGTCTGTGACTTCCCTCTCTGTTGCACTTACCAACCCTCCCTCCATGTCTGGAATGAGAAAAGAAAAAGAGCATCATTTCCAGAGCCCAGGTTTGTCATCTCCCAGGCATCTCAGAACCAGTATCCTCTTGGAGAGCATTCAAGGAAAAAGTCCAGAAAGTGCGCTGTCAGACCACGTCACTAAGAGTTTCATCAAGCTCTTAGAGATCGCTCCTGCAGGGCCCACTGCTGTGCTTTTCTGAAACATCCATTTATTAACAGAGCCCCACTATTTTAACATGTTCCAG
Seq C2 exon
GCCCTAGCACAAAACACAGATCTTAAAGAACGCTTACGCAGAATCCATGCCGAGTCTCTGCTCCTCGACTCCCCCGCTGTCGCCAAGTCGGGTGACAATCTGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882-OSBPL3:NM_015550:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)