HsaINT0118643 @ hg38
Intron Retention
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr7:24870732-24871795:-
Coord C1 exon
chr7:24871742-24871795
Coord A exon
chr7:24870846-24871741
Coord C2 exon
chr7:24870732-24870845
Length
896 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CCCTCTTGGTGCCTCTGCAGATA
3' ss Score
9.69
Exon sequences
Seq C1 exon
AGATTCTTCTATCTGGACAAAGGAATCTTGAAATATGCCAAGAGCCAAACCGAT
Seq A exon
GTAAGTCTTTTTGTGGGCCCACTGTGGTATTGAAGAATCCTAAAGGGGTAACCATCAGCTCAGAGATGAGAGTGTGTATAGTTGAGGATAGCTTTTCTCGGAACTGGAAACCATAGAGGGGAAACACTTCTGTCTGAGCTCTGGGTTCCAGGCAGGCTCAGTTCTTCCACCAGGTCAAGGTGCAGGGGCTCCCGCAACACTCTCTGGGCATGCAAAAGTCTGTTCTGGTCTTAAGGTTGTGCTAAGGAGTTCCTGGGGTGGGAGAATACATCCTTGCAGCTAGATAACAGGAACAAAACATAGGGCATCCCTCCCTCTTGCACTGTGACCGAGAGATTCCGGGGAGAAGCCCCTGGGTGAAGAAGTTCCTTTTCAAATTAATCCCAGGCAGTTGGTGTGTGAAGGCTCTGTGTGTGAATGACCATTTGTCCTGTCCCTTGTAGGAGTCCTACTCTTCTCCCTTCTTCCTCTCCTGTCCTCTCTCAGCCTTCTGCTCTCACTTCTTTTATTAATACATCACTTCTAAATGAATTTAGACACCAGAAACTCATTCAGTGGGAGGTGGTACAGTTGACAGGTGAATTCACTGCCATGGGAGTCAACCCACGGTGCTTACTCTTTTGTTTCCTCACATCCTGGCTGTGTAAACTGCTTGTTACTTAACCCCTTTGTACTCCAGTTTCTTCATCTGTAAAATGGGGAGAGTACTTCCTACCTCGGAGATTCAGGAAGACAGTGCATGTCCAGCACGTAACTCAGCACTGGCTCACGCTAAGTGCTTGATGAGTCGCAGTGTTTGTGATTTTACTATCAGGGGATGTGGAAGGGTGTGTCAGGGATGTGACTACTGCTTCTAACACCATGGTCCCCAAGTGACCCTCTTGGTGCCTCTGCAG
Seq C2 exon
ATAGAGAGAGAGAAGCTGCATGGCTGCATTGATGTCGGGCTCTCAGTGATGTCTGTAAAGAAGTCATCAAAATGCATAGACCTTGACACCGAGGAGCACATCTACCATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882:ENST00000313367:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(18.9=100)
A:
NA
C2:
PF154091=PH_8=FE(41.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development