RnoINT0105778 @ rn6
Intron Retention
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80088912-80089885:-
Coord C1 exon
chr4:80089832-80089885
Coord A exon
chr4:80089026-80089831
Coord C2 exon
chr4:80088912-80089025
Length
806 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TCCTCCCTGTGCTTCTGTAGATT
3' ss Score
9.72
Exon sequences
Seq C1 exon
AGATTCTTCTGCCTGGAAAAGGGAATCTTGAAATATGCCAAGAGCCAAACTGAT
Seq A exon
GTAAGTCTTCTTCTTAGCCCAGCATGATATTGAAGAAGTGTGCAGGGTGCTTGAGGTCAGCCCGGGGCCACAGTGCTCTATGGGTAATGATTTTTCCACACCCACCCTGACCCCTGCCATTTAGCTTTAGATCTGGGTGGGCTCCATTCACCACCAGGAGAAGGGGCAGGACACCTTTACTGAGTTCTATAGGTCTTTCTGGTTTTAGCTAATTACGGAAACAGAGCATGTGGGAAGTGTCCTTCCCACTCTCATGGTGACTGAGGGGCTTGGTGGAGAAAGCCATGGCTAATGTGGACTTCCTCTTGAGTTAACCCTAGAGGTTGGTTAGAGGGTTCTGAGTGACCAGCGGGCCTATCTCATAGGGTGCTCTCTCCTCTTTCACAGCCATTTGAGTCCTCCCTAGTTTGTCTACATTCTTTGTTTTAAGTCACTTATGGACTAATGTAGACAGCAGGCCCCATTCCAAGGGACAGCAATGGTTCTTGCATTGCTGTAGAGTCACCTCATGGACTCCAACTCATGGAGTTTCAGCTCCTTCCCTTGCATCCTGGCTATGGAAACTCATGTTTATCCTTCAGCCTCTTCACCTGTGAAATAAGTCGAGTGCTTCTCCCATTCAGAAAAGGAATGCAGTCCATGTGCAACTCTTAACTGAGTCCTGCTTGCATGGAGAGCTCCATCAGTCATAGCATCCAGGTTTAGCGTCGGCGGTTGTAGAAGATGAGGTGGGGAGGGGCTGGGGAGGATGTTACAACCACGTTGACCACTGTGACTCTCAAGCAGTCCTCCCTGTGCTTCTGTAG
Seq C2 exon
ATTGAGAGAGAGAAGCTGCACGGCAGTATTGACGTGGGGCTCTCCGTGATGTCTGTGAAGAAGTCATCCAAATGTATAGACCTCGACACCGAGGAGCACATCTACCACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011:ENSRNOT00000013828:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(18.9=100)
A:
NA
C2:
PF154091=PH_8=FE(41.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]