HsaINT0119116 @ hg19
Intron Retention
Gene
ENSG00000183378 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:29970]
Coordinates
chr11:7718012-7718346:-
Coord C1 exon
chr11:7718256-7718346
Coord A exon
chr11:7718137-7718255
Coord C2 exon
chr11:7718012-7718136
Length
119 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
TCTCCATGATCTGCCTACAGACG
3' ss Score
7.34
Exon sequences
Seq C1 exon
CCTGGTGCAGTGAGCAGGATGTCATAGTCAGCGGGGCTGAGGGGAAGCTGCACTTCCCAGAAAGCCTCCACCTATATTATGAGAGCAAGCA
Seq A exon
GTGAGTAACCCCCTTTGTACTCCTCCTCCTTACTCCCACCTCCGGTCTGGGCCCACCAATTGGACTGTGATAGTCGTTTTCTGTCTAGAAATAACGCCCTCTCCATGATCTGCCTACAG
Seq C2 exon
ACGGTGTGTCTGGACCCTGCTGGTACCAGAGGAAATGCATGTGTTGCTCAGTTTTTCCCACCTAGATGTTGAGTCTTGTCACCACAGTTACCTGTCAATGTATTCTTTAGAAGACAGACCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183378-OVCH2:NM_198185:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(25.9=90.3)
A:
NA
C2:
PF0043115=CUB=FE(38.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGAGCAGGATGTCATAGT
R:
CAATGGGTCTGTCTTCTAAAGAATAC
Band lengths:
210-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)