MmuINT0114173 @ mm9
Intron Retention
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:114933593-114933927:-
Coord C1 exon
chr7:114933837-114933927
Coord A exon
chr7:114933718-114933836
Coord C2 exon
chr7:114933593-114933717
Length
119 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
TCTCATGTATCTGCCTACAGACT
3' ss Score
8.36
Exon sequences
Seq C1 exon
CTTTATGCAGTGAGCCTGATGGTCTCATCAGTGGGTCTGAGGGAGAGCTGCACTTCCCAGAAAGCCTCCACCTGTACTATGAGAGCAAGCA
Seq A exon
GTGAGTACTCCCTCTATGTCCTCCCCAGGCTCCACCTCCAGCCTGCCTGTGCCCATTGACAAAACTGTGACTGTCACTTTCTGGCTAGAAGTTACACTTTCTCATGTATCTGCCTACAG
Seq C2 exon
ACTGTGTGTCTGGACCTTCCTGGTTCCAGAGGACATGCATATGTTGCTCAATTTGTCACACTTGGATATAGAGTCTTGTCACCACAATTACCTGGCAATGTACTCTTTAGAAGACAGACTCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236-Ovch2:NM_172908:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(25.9=90.3)
A:
NA
C2:
PF0043115=CUB=FE(38.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGTGAGCCTGATGGTCT
R:
CAACGAGTCTGTCTTCTAAAGAGT
Band lengths:
212-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: