HsaINT0120115 @ hg38
Intron Retention
Gene
ENSG00000100767 | PAPLN
Description
papilin, proteoglycan like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr14:73263645-73264335:+
Coord C1 exon
chr14:73263645-73263782
Coord A exon
chr14:73263783-73264210
Coord C2 exon
chr14:73264211-73264335
Length
428 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TCCCACACCACCCCACTCAGGCA
3' ss Score
2.55
Exon sequences
Seq C1 exon
GATTAGCTTGGCAGGTGTGGAGCCCTCGTTGGTGCAGGCAGCCCTGGGGCAGTTGGTGCGGCTCTCCTGCTCAGACGACACTGCCCCGGAATCCCAGGCTGCCTGGCAGAAAGATGGCCAGCCCATCTCCTCTGACAG
Seq A exon
GTGGGTGAGAGTCCCCCCACCTCCTCTGACAGGTGTGACAGCCCCCCTACCTTCCCTGACAGGTGTGTGTGACAGCTCCCCCACCTCCTCTGATAGGTGTGACAGACCCCCTCCTCCTTTGACAGGTGTGTGTGACAGCCCCCCTACCCCCTCTGACAGGTGTGTGTGACGGCCCCCCGACCTCCTCTGACAGGTGTGTGTGACAGCCCCCCGACCTCCTCTGACAGGTTCACGTGACAGCTCCCTCCACCTCCGCTGACAGGTGTGTGTGACAGCCTCCCCTGAAGCATATTCCCCCAGCCTCACTTGGGGTGGGAGGGTGCTCTGTAGACTCTGGTCCCCTCTGGCACGAGCACCGAGGCGGAGGGAAGACTCACTGTTGCCCTTGGGAGCCCAGAGCTCATGTCCTCCCACACCACCCCACTCAG
Seq C2 exon
GCACAGGCTGCAGTTCGACGGATCCCTGATCATCCACCCCCTGCAGGCAGAGGACGCGGGCACCTACAGCTGTGGCAGCACCCGGCCAGGCCGCGACTCCCAGAAGATCCAACTTCGCATCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100767:ENST00000340738:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=NA C2=0.588
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(50.0=87.2)
A:
NA
C2:
PF0767911=I-set=PD(48.8=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTAGCTTGGCAGGTGTGGA
R:
TATGATGCGAAGTTGGATCTTCTGG
Band lengths:
262-690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development