HsaINT0120127 @ hg38
Intron Retention
Gene
ENSG00000100767 | PAPLN
Description
papilin, proteoglycan like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr14:73250907-73251836:+
Coord C1 exon
chr14:73250907-73251030
Coord A exon
chr14:73251031-73251663
Coord C2 exon
chr14:73251664-73251836
Length
633 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
AGGCGGTCTCCTCTGCGCAGCTG
3' ss Score
6.85
Exon sequences
Seq C1 exon
GTTGTCGGCTGTGATCACGAGCTGGACTCGTCCAAGCAGGAGGACAAGTGTCTGCGGTGTGGGGGTGACGGCACGACCTGCTACCCCGTCGCAGGCACCTTTGACGCTAATGACCTCAGCCGAG
Seq A exon
GTGGGGGTGGTTCCGACAAGGGGCAGTTGCCTGCCCCCTTCCTTGCCTGTCCCTTCCTTGCCTGTCCCTGCTCTGGCCTAGACTCCAGGCCAAGTGGCCCTCATGGCACTGGAAGGCTCTGATCATATCAGGTCACATCTGAAAGGCCCCCTGTGGCCTTTGGTTAGGACTCGTGCCCGCTCGTGCAGTCCCATCTCCTGCTGCCACCGCCTGGATGCCCTCCCCATCCCTTCCCACTCCCAGTGTGCTCCGGGTGCCCTGAGCCTTCCCGCCACCCTGGCTTTTGTACTGCGGCCTCTTCTGCCAGGGTTGCCTTTCCCAGCAGCTCGGCCCTGTCTGGCTCTTGTGTACCCTCCCTGCCCCCATTCTGTGCTGTGTGGCACTTGGAGTCCTGTTTGAGTGGTGCCGGGAGAGGGATAGCCCAGCACACCCAGCACCTGCGTCTCTGCCCCCAGGCTACAACCAGATCCTCATAGTTCCCATGGGTGCCACCAGCATCCTCATCGACGAGGCTGCTGCCAGCAGGAACTTCCTGGGTGAGAGCCTAGGGTTAGGTCCTAGGCAGGTCTGGGGCTGCAGGGGGAGGTGCGGCACTGCTCCCTCTGGCTGACTGAGGCGGTCTCCTCTGCGCAG
Seq C2 exon
CTGTGAAGAATGTTCGTGGGGAATACTACCTCAATGGGCACTGGACCATCGAGGCGGCCCGGGCCCTGCCAGCAGCCAGCACCATCCTGCATTACGAGCGGGGTGCTGAGGGGGACCTGGCCCCTGAGCGACTCCATGCCCGGGGCCCCACCTCGGAGCCCCTGGTCATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100767:ENST00000340738:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.254
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(12.1=33.3)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(49.1=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTCGGCTGTGATCACGAG
R:
GATGACCAGGGGCTCCGAG
Band lengths:
294-927
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development