HsaINT0122644 @ hg19
Intron Retention
Gene
ENSG00000090857 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:30264]
Coordinates
chr16:70162687-70163025:+
Coord C1 exon
chr16:70162687-70162768
Coord A exon
chr16:70162769-70162861
Coord C2 exon
chr16:70162862-70163025
Length
93 bp
Sequences
Splice sites
5' ss Seq
GAAGTACGT
5' ss Score
7.46
3' ss Seq
TCCCTTGTGTTCTGTGGCAGTGT
3' ss Score
8.26
Exon sequences
Seq C1 exon
GTTACACAAGGACAGGCTCAATCTTTCTGGCCCAAACTCAGGACCGACTGATCTCCCTGAAGCGCATCAACGCAGGGCTGAA
Seq A exon
GTACGTAAGAGTCTAGAAGCGTGTCCTGACTTTACCACACTGGCCTCTGCCAAAGAGCCTGTGAATGTCATTGTCCCTTGTGTTCTGTGGCAG
Seq C2 exon
TGTTATAGGTATCCCTTCTGAGATCATCTCCCCCAAGAAAGTGGCCGAGCTTCACCATCTCCTCAACGTGCACGACCTGGTGGGGGCCATGCATGTTCCCGAGGATGCAGTGGTGTCTTCCGCTGACGTGGCTCTTGCCCTGGCAAGTGCTGCCTCCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090857-PDPR:NM_017990:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(7.5=100)
A:
NA
C2:
PF0126619=DAO=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGGACCGACTGATCTCC
R:
GAAGACACCACTGCATCCTCG
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)