MmuINT0003812 @ mm10
Intron Retention
Gene
ENSMUSG00000033624 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:MGI Symbol;Acc:MGI:2442188]
Coordinates
chr8:111112502-111112850:+
Coord C1 exon
chr8:111112502-111112583
Coord A exon
chr8:111112584-111112686
Coord C2 exon
chr8:111112687-111112850
Length
103 bp
Sequences
Splice sites
5' ss Seq
GAAGTACGT
5' ss Score
7.46
3' ss Seq
TCCCCTGTGTTCTATGGCAGTGT
3' ss Score
8.23
Exon sequences
Seq C1 exon
GTTACTTAAGGACAGGCTCAATCTCTCTGGCCCAGACTCAGGACCGGTTGATCTCTCTGAAGCGTATCAACTCAAGGCTGAA
Seq A exon
GTACGTAAGAGTTCTATATACTCTTAGACTAAGGACTACACACCCCTCCTGACTTTGCCACAGAGCCCATAACAGTAGAATTTTCCCCTGTGTTCTATGGCAG
Seq C2 exon
TGTTGTAGGTATCCCTTCTGAGATCATCTCCCCGAAGAAAGTGGCTGAACTTCACCCTCTCCTCAATGTGCATGATCTGGTCGGGGCCATGTACGTTCCTGAGGATGCAGTAGTGTCCTCTGCTGATGTGGCTCTGGCCCTGGCAAGTGCTGCCTCCCAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033624:ENSMUST00000039333:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=PD(24.3=92.6)
A:
NA
C2:
PF0126619=DAO=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTAAGGACAGGCTCAATCTCTCT
R:
CATTCTGGGAGGCAGCACTTG
Band lengths:
243-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types