RnoINT0109335 @ rn6
Intron Retention
Gene
ENSRNOG00000022593 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:RGD Symbol;Acc:1308307]
Coordinates
chr19:43131959-43132434:-
Coord C1 exon
chr19:43132353-43132434
Coord A exon
chr19:43132123-43132352
Coord C2 exon
chr19:43131959-43132122
Length
230 bp
Sequences
Splice sites
5' ss Seq
GAAGTGCGT
5' ss Score
4.88
3' ss Seq
TCCCCTTGTGTTTTGTACAGTGT
3' ss Score
8.49
Exon sequences
Seq C1 exon
GTTACTTAAGGACAGGCTCAATCTCTCTGGCCCAAACTCAGGACCGGTTGATCTCTCTGAAGCGTATCAACTCAAGGCTGAA
Seq A exon
GTGCGTATGAGAACTACATACTCTTTTTTTTTTTTTCTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCACCCCTGAGAACTACATACTCTTATTAGACTAAGACTGCACACCCCTCCTGACTTTGCATGCTTGACCTCTGTCAGAGAGCCCATAAATGTCATTGTCCCCTTGTGTTTTGTACAG
Seq C2 exon
TGTTGTAGGTATACCTTCTGAGATCATCTCCCCGAAGAAAGTGGCCGAACTTCATCCTCTCCTCAATGTGCATGATCTGGTGGGAGCCATGCACGTTCCTGAGGACGCAGTAGTGTCCTCTGCTGATGTGGCTCTTGCCCTGGCAAGTGCTGCCTCCCAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022593:ENSRNOT00000038452:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(7.5=100)
A:
NA
C2:
PF0126619=DAO=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTAAGGACAGGCTCAATCTCTCT
R:
CATTCTGGGAGGCAGCACTTG
Band lengths:
244-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]