HsaINT0122721 @ hg38
Intron Retention
Gene
ENSG00000148459 | PDSS1
Description
decaprenyl diphosphate synthase subunit 1 [Source:HGNC Symbol;Acc:HGNC:17759]
Coordinates
chr10:26702162-26704741:+
Coord C1 exon
chr10:26702162-26702194
Coord A exon
chr10:26702195-26704676
Coord C2 exon
chr10:26704677-26704741
Length
2482 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTGACATTTTTATTTTATAGATA
3' ss Score
9.31
Exon sequences
Seq C1 exon
GTTCATAGGCGGAAGGGACTTGACTTGTCTCAG
Seq A exon
GTAAGACTTTGGACTTGGACTTTTGAGTTAATGCTAGAATGAGTTAAGACTTTTGGGGACTGTTCGGAAGGAATGATTGGTTTTGAAAAATGAGGATATGAGATTTGGGAGGAGCAAGGGGCAGAACGATATGGTTGGTTCTGTGTCTCTACCCAAATCTCATCTCAAATTTTAATCCCCATGTGTCAAAGGAGGGCCTATGTGGAGGTAATTGGATCCTGGGGGCAGATTCCCCCATGCTGTTCTTGTTATAGCGAATTCTTATGAGATCTGATGGTTTTATAAGTGATTGGTAGTTCCTTCTGTGTTCATTCTCCTTCCTGCTGCCTAGTGAAGAAGGTGCCTTGCTTTCCCTTTTCCTTCTGCCATGATTGTAAGTTTCTTGAGGCCTCCCTAGCCGTTTGGAACTGTGAGTCAGTTACACCTCTTTCTTTTATAAATTACCCAGTCTTGGGTATTTCTTTATAGCAATGTGAAAACATACTAATACACCTCGTTTCTAAAAATCAGCTACGCATTGTGGCATGTTCCTGTAGTCCCAGCTACTCAGTAGGCTGAGGTGGGAAGATAGCTTGAGCCCAGGAGATTGAGGCTGCAGTGAGCTATGATTGCACCACTGCACTCCAGCCTGGAAAAATAAAATAAAAGTAAATTCATGAGAGGCAAGGTTGACTTTCAGAGAGTGTGTGAGGGAAAGGTAAGAAACAAAATCGGAATTAGAAAATGACTGTTGCCCCTCTCTTTTCATTCTTCACTGCTTTTCTGAGCACCTCTCACCTCCCTTTGAAAAACTGCTCTAAAGTACTTTTAAAGCAGAAAATAGTAGCTTGATTGAATAGATACTGTATTAAATGTATATTGTGTACCAGGCTCTGAGCTAAGAGCTTTACATCTGCTCTCTAAATTAATCTCCACCTCTCTCCATGAGTAGGTATTATCAGAAAGACATCACAAGGTAACACAAATGTTGAGATTTGAACCGAGATCTGTCTTCCAAAGTCCATGCTACTAATAATTGTTAGGCCACTTGGTGGTAAAAAGCGTCCCCTGTATTAATTAGCTGTGTAATTTTAATCCTTCAACCCAGATTAGGGGTCTATAACTGAATAACTAAAAAGTTATTCAGTTAGAATAGTTCAGTTAGTTATTATAACTAATCATAGTTATTTGGTCAAGCGCAGTGACTCACGTCTGTAATTCCAGCACTTGGGGAGGCTGTGGCAGGAGGATCACTTTTGCTCAGGATTTCTAATAATAGTAACTATTACTAGAGACCTGATAATAATTATTAAGTCTCTTACTGAAGAAGTTTTACTCTTCCATTAAGATGCCCTTATTTATAAGTATTATAATAAAATACTGAACTCATATGAATTAATTACCCATGTAGACTGAAAGACATAGGTTGTCATATAATGGTTGTCATATAAAGCATGAAGGAGGATTGTCACTTTGTTTTCTTGTTGCACTGTAATTGCCTGGGATATCATGAAAGTTCTTACTGGTTTAATGAATATGTAATGCTGTGGGGGAAAGAATGAAACTCAGGCCAACTACTTTGACTGGTGTCTGGCAAAGTCAACTTTCATTGTCATTTTAATATGGCGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGAGGTGGTGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGACAGGAGAATGGCGTGAACCCTGGGGGGCGGAGCCTGCAGTGAGCCGAGATAGCGCCACTGCACTCCAGCCTGGACGACAGAACGAGACTCCGTCTCACAAAAAAAAAAAAAAAAAAATATGGCTAGAGCAATACATGTTCATTAGAGAAGAATCAGAAAATATCTACCAAAAGAAGGAATAAAACAAAACACCCCCACAATCCGATTCATTCCAGAATAACTACTTTTAACACCCTGGTTTGTGTGCTTTCAAACTCTGTTCTCCCATTTCCAAAGGATGTTGAGGAACACGAACTTAAAATAGACAGTGTTTGTATAAATATAAATTCCTTCCTTGCTATTGAAATCTTTTTTCCTCTGACCAATCTTAGTTAAATGGAAGGAAATTGTTTTAAAACTAATTTTCAGGTCTGGAAAGATAGATATGAATATGGAAATGGCTTTCTTTGGGGGAAGGGATGGACTGAAGATGGTTTTTATTTTCTCCTTTTTTCTTATTTATGTTTTCTGCAATGACAAGTATTTTGTAATAACAAAAGGAAACTTTAAAATTATTCTTCCTCTAAAGTTTGCAATCTACCTGTAAATGGGTGATTAGAAGATAAAGATTATAATTATGGGGGTTTTATCATCCAATGTTACAGTTTTTCAGGAATATTCTTACAAGTTTCTTGACATTTTTATTTTATAG
Seq C2 exon
ATACCCTATATTAATCTTGTGAAGCATTTAACATCTGCCTGTCCAAATGTATGTCGTATATCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148459:ENST00000376215:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development