HsaINT0122725 @ hg19
Intron Retention
Gene
ENSG00000148459 | PDSS1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:17759]
Coordinates
chr10:27009147-27012846:+
Coord C1 exon
chr10:27009147-27009288
Coord A exon
chr10:27009289-27012734
Coord C2 exon
chr10:27012735-27012846
Length
3446 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTCCCCCTGTCTTTTTCTAGGCT
3' ss Score
12.28
Exon sequences
Seq C1 exon
ACATGTGCAAGCCAGCCAGCGCGCCATAGCCTTAATTGCAGAAATGATCCACACTGCTAGTCTGGTTCACGATGACGTTATTGACGATGCAAGTTCTCGAAGAGGAAAACACACAGTTAATAAGATCTGGGGTGAAAAGAAG
Seq A exon
GTATGGTTTTTTGGTTTTTTTAAAATCTCTCTTACTGAATCACACACTTTTCGGACCGCATTTGTTTCTCAGATTTGTCTCATTAAAAATATGCTTGCTCAAATGTAATGTGGTCTTCTGAATTTCAAAAAAGTATTCATGTCTTGTCCAAATACAGATATTTGATAAATAAATAATAAAAAATACCATGGAAAAATAAACTTAGTATTTCTAATAGAATTCCTTTGGTTATAAGGAAAGGGATTTTCATGGGTGTCCAAAAAATGTATTTCATGAGGAATCATACGTTTTACTTTTGGGCTTAGATTACCCAGATTCAGTTTAATTTTTTAAACATTTGTATAATTGAGTGCTGCATATAAATGCCAAAGCAAACAAATAAAACTAATAAAAGAAAAAAGAAACCTCAGAGAGATACTGTTCTGCCATGAAAATTCTGTCTTTTGAAATAGAAGTTCTGTAATTGGGTTTGGTTCATATATGTATATATTAAAGCATATTTCTATATTATTAGCATTGGGAATATGGGAAACAGGGACTTGGTTTGAGGATGCATAGATCCTGGGTTGAAGGATGAGAATAAAGTTGAACAGATGAGAATGAAAATGCACAGGCATCCATCGCCATCACCACACACGTGCTCTACAAACAAAAAGTTTGTGCAGGCCAGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACAAGGCAAAACCCTGTCACCACTAAAAAAACACAAAAATTAGCCAGCGTACACCTGTAATCTCAGCTACTCAGGAGGCTTAGGCAGGAGAATCGCTTGAACCTGGGAGAGGGAGGTTGCAGTGAGCCAATATCACACTACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCATTTCAAAAAAAAAAAAAAAAGTTTGTGCAAACAACTACCCCACCCTCACCTCCTTTTCTCTCATAGATTTATAGTATTCCTGGTTCATTCCTATTTAATTCTCCTTATTAAAAGAAGAGATATATGTATACACACACACACACACACACACACACATACATATATATATGTTTATTGTTATCTTCACATGCTGGTTTTATTTGAACATAAATGACTGTTTTGAAATCGAGTCTTGCAATTTCATTTATATGCCTTTTATTTCAAATTTTAGATTAAAAGGTTTTACGTCCTGTTGACTAAATTCTGTACATCAGAATGTTGGCCAAAAAGCAGATGGCGTTTAGATTTGGAGAGGATGTGGGTAACTCTATGACCCATCCCTGCCGTCAGCTGTATCTGTTTTCAGGCATAGCCAGTCCTAAAGCCTTATGTGGAGCCTTGGGCGGGGGAAGAGGATCAAGAGAACAAATGATGGTCTCCGCCTTGGCTAGCCCCTGTGTGTCTGCCTCTGCCACTGGGGACCTCTTTCTGAGGGCAGGTCAAGGACACATGTGCCGCCTTCACCTGCCTCTTTCAGTTCTGACAGCCATCTGCTTAGCACAGGGCTACTTGCCAGTTCCTACCTGTTTCTGCCTCTGACCCACAACTGCTATGTTACCGGTACAAAACCCCCCACACACAGTGCCCCCTCGGTGAGCCCTTGTTAGGCCTGGCCTGGGCTTCCTAGCACTTCTTTCCTTTAACTCCCACCCCTGGCCGTCACAGTCCTGTGGCTTCCATGTCATATGCTGGACCTTTGGTCTCTAGGATCTCCCCGGCCAGGTGAAGAAGGAACTAAAGGCCAAAGGATCCCGAGCCTTGAGCTGCTAATGATGTAGGGGCTGGGTCGGGGAATGTAAGTGGGTACCTATATATCATAATTTGTAAAATGACTTTATAGGCATATACTTACATCAGGATGTCTTACATAATATGTATATTATATAAAGTGGTGATTAATTGGTAAACACAATGAACATCACTGTTTAGATACTGAAGAACCTAAGACAATAAGTACCTAAATAGTTATGTTAAAAATTCTGTGAACTCTAGCCTTTATGACTAATTACTACAGAATGTAACACTTACGGCTGGGTGTGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCAGTTGGATCACTTGGGGCCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTAGTAAAAATACAAAAATACCTGGGCGTGGTGGTGTACGCTTGTAGTCCCAGCTACTCATGAGGCTGAGGTGGGGGGATTGCTTGAACCCAGGAGGAAGAGTCTGCAGTGAGCCGAGGTCATGCCACTGTACTCAAGCCTGGGCAACAGAGCAAGACTCTTTCTCAAAAAAAAAAAAAAGAATGTAATATATATCTTTAAATATGCAAATTAATGTGATATATAGGGTGTATTTGGTTATAGCATATAATTCAACTATTTATGCAGTAGTTTATAACTAGTTGCTAATACAGTGTAGACATCCATCACAGTCTAAAGAAGACTGGAAATATGTTGATTGCTTAGTGTTCAATGGAAAAACTTTTTTTTTTTTTTGTCTAGGAATGAGGGGCAGTGTCACATAGTACAAAAAGCATTTCACTTGGAGCCAAAATTCTTTGGTTTAATTTTTATTGAAAATAACATGTATCGTGCCATGCTCTGGGGTGTGCTCAGTACTAGCTGAGATGATTCCTAGTCTGAGCTCCCACTCCACTCCACCCTCCCCACTGCCCTGGGAGCATAGAGACTAGAGCATCACTGACTGGTACGCAAGGTGTGATGGTCGCAGCATGCATGGGTGTTGTACACGCACAAAAGGGAGGCATCTGACCAGACTGAGGGATCGGGGGGAACTTCTTAGAGGTGGCATCTGAACCAATTATGCAAATAAGTCCACTCAGTGAAGAAGGGGGCAGAACTTTTTGAGCAGAAGGAACAGTAAGTGGAAAGGCACAAAGGAAGAATGAACATCCAGTGTAGTGAAACTGAAGGCAGCTGCATTTTGGTGGGGCTGGTGAGTGAAGCTGCTCTCCCTCTCCAGGCATTGATTTCTTCAGGTGTCAACTGGGGAGATGGACATGGTCATCTCTGAGAGCCAATACAGTTCAAGTACTGTCCCAAATCTGTAACCGATTATTAGAAACTGGGAAGAGTGACATGGTCATCTCTGAGAGCCAGTCCAGTTCAAACACTGTCCCAAATCTGTAACTGATTATTACGAACTGGGAAGTGACATGGTCATCTCTGAGAGCCAGTCCAGTTCAAACACTGTTCCAAATCTGTAACTGATTGTTACGGACTCCTGTTGAGGAAGAAGAAGGTAAAAAACCCTGCATCCAAGATGAGCCCCCACTTCCACGAAGCTCCCTTCCAGTCAGTTTCATCATTGGCTCTACTGCTCTGATGGATTTTTCAGAACGTTCTGTTTTCCCCCTGTCTTTTTCTAG
Seq C2 exon
GCTGTTCTTGCTGGAGATTTAATTCTTTCTGCAGCATCTATAGCTCTGGCACGAATTGGAAATACAACTGTTATATCTATTTTAACCCAAGTTATTGAAGATTTGGTGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148459-PDSS1:NM_014317:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(17.9=100)
A:
NA
C2:
PF0034812=polyprenyl_synt=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)