HsaINT0122956 @ hg19
Intron Retention
Gene
ENSG00000162517 | PEF1
Description
penta-EF-hand domain containing 1 [Source:HGNC Symbol;Acc:30009]
Coordinates
chr1:32100823-32110838:-
Coord C1 exon
chr1:32110442-32110838
Coord A exon
chr1:32101124-32110441
Coord C2 exon
chr1:32100823-32101123
Length
9318 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATATCTTGCTCTTCCTGCAGGGC
3' ss Score
10.95
Exon sequences
Seq C1 exon
AATTACGTCACTATCATGCGTCCCATTTGCCAGGTTATAACATGGCTACCGCAGCAACACCCCACCCAGGCTTCTCACTAAATTTCCCAACCTGACCACCTCTTCGGCCCACTCCACCTCAGGAAAAGGAGGAACATTAGCGCTGGTACAGCCGCCAAGACTTCCGGAAGCTCCATCAATCACTTAGCTCCCCTGGTCTCTCGGGTAGGCATCCGCCCACCGCCCCCATCGTCACTTCCGTCGGCCGACAGCACCCAAGATTGACAGGCGCGGACGTCCAATCAGATGCGGGCCCAGCCCCAAAGCCGAGACGAGGGGCGGGTTTGAGAGCGGAAAGCCCCACCCCTTGCCTGAGTGTGACGTCAGAATCACCATGGCCAGCTATCCTTACCGGCAG
Seq A exon
GTGAGTGTGTGAGGGGCCCGCGAATCCAGGTAGCGGCGGTGCCAGGCGCAGGCCCGACGTCCCCCTGCTCTTTCTCCCCGCTTTCTCCGCGCCCTTCCCACGATGGGTTCGCTTCAGCGAGGCCTTGCGCTGTAGAGAACCGAAAAGGGACCGTCGGTCGCGCCCTGCTCACGTCATGAAGGACCGCACATTCGCGAGGTCGTGTCGCGCCCCCTTGACGTCGCTCACTCGAGGATTTGGGGACCTTGGACCCCACAGGTCCAGGCTGGCGCTGGCCTGGGCTCCACAGCCTCCCAAGGCCCTCATGGGGGCCTTGGGCGGGGGCATCAGCCATGACCGGAGGTTTAGAGTTCTGGTTCCGCCGATCTCATTTGGGGCGTCGGATAAAAATCCAGGCTTCCGGACCCACCCCACACTGCATCAGAGTCATCAGGAAACTCTGGTTGTAGCAGGCGCCACAAGTGAGCTGGTTTGACCACTGACTTAGTTCAACACCGCCATTTCGCGTGTAGAAAAGTGAACCCCGAGAAGACACAGAACTTACCTGAAGTCACCAGGCAGTTAGGCAGCAGGGCCGAGGTCAGAACCCGGGCTATCTTCAGATGCCTCTTCCCCAGCGTATCTTGATTCAGTCAGGAATACCGCAGCAAGGTGATTCTGTGGCCAGAATTCTTTGTTGGGTGATAGTAGGGTGTTGAAGTGCACTTTGGTGTCAGAGGTAGGTTCATATCTTAGCTCTACCACCTAAATAGTTGTGAGCCCTTGAGCAAGCTGTTTTGCCTTTCTGAGTCCAAGTTTCCGCCTGTAAAATAGGGCCGAATAATAGGATCTGCCTCATAAAGCTGTTGTGGAGAGTCAGGAGGTGATGCTTACGAAGCGTTTGGTACATAGTGAGGTGTAACATGTGTTGCCCTTTAGCATTTTGATTTTTAGTAGACTTCTAAAAGGCCAGTGCCCGGAGGGTCCTCAAAATAGAGCCCTCATTTTACAGAGGAGGAAATGAAGCCCACAGAGGGCTGCGATCACACAGTTATTTAGGAGATGAAATCCATAAACGAAATGTGGGAAAACAAGATCAATTGGTATATTACACAGTGCTCAACTGAGTTTAGTCACAGGCCAAAAGATGTAACAGTCCTTCCAGGGAGTGCAGTCTTGTGCGGGTTACACAGTGTTTGGACCTCCATTATCCTAATCATGAAGTCCCTATCGGCATGCAGGTATTATTACCCCTAATTAACTGCTGAGGAGCAAACCCAAAGAGGTTAAGTGGCTTCCCAAAAGTCACACGTAGTAAGTGAGGGTGAGGCCATGACCAGAGCTTAGGACTTCTCTTATTGCATCCTTAGAGAGAGGTAGGAAAGAGAGAGGCCAGTGCGGGCTGGAGTTAGGAAGTGTAGCATAGCAGTTGCTTCCTAAAGTCCATTCCATTTGCTGAGTCTTGGGAGGTTTTAATAGATATTGTTAATATAGGAGGATTCTGTAGTTAACTAAAGTTTTGGAAATACTCTTAAGTATAGCTGAATAAGTTTATTGACCACAAGCTATTTCAGAATCCTTAATTTGCTAATGTACATTGTAAATCATCCAGAAAGGAATATAATATGCAGTATTTCTTAAACATATCTAACCATAGAAACTCCGCCTCCCGGCTTTCTTTTCAGATGTCTGGTCACTTTTTTGACTCTAGTATTTCTGAGGAACACAGGCTGAAAAAACATTCATAGCGCCTTGTTTCCCAGTGGCTGGTCTTCTGCCTCAGAATCAGCTGAGAGCTTGTTTAAGAAAGCACACTTTTGGGTCCCACTTCAGACCTGTTCTGTACCCAGGAATCTACATGCTAATAAGCATTAGGGACAATTGGTGTGCATCCTAAAAGCAGTGACAGGTTAGAGAGAACTGTGCTAGAATTCTAGCTGTATTACTTAATAGTTATATACCCCTGGACAAACTAAGGGCTCTGAGCCTCAGCTTCCTCACCTGTATAAAGGGAGAAATAATACCTGTGAAAAGGGCTAAAATGAGGTTAAAATGCAGGGAGCCTGGCGTGTTGCTAGTGCCTAGTACATGCCAGTGTCTGGTGGCAGCTCTTGCTGCCGTGACTGCTCTCATGATGCCATGCTGCCTGGGCTATTCCTGGAGTGAAATACTGAAAAGGAGCACAGAGAGAAGAGTCTGGAATAGAAAAAGAAATGTTGTTTTTTTTTCCTACCATACCCTTGTCCGCCTCCTGGTCTCAGGTGTTCTAAGAAAGGAAACGAGTTGTTTTAAAGCATCTCAGTCAGTGCTGCCTCCCCTCCACCCACTACATAGCTTTGGAGGATTCCAGCCTATTGTTAGGAGTCAGAATTCCTGTAATTTTCCACTGCTTCCAGTCCAGGGTACCCAAGCAGGGACTGGGTATTGGAGTAGTAAAATTCAAGCACCCTTTGGTCCTATGGGGGAACGAGCTTGGTGGATTTCAGTGCTTAAGAGCTTAGTTTTTGAGGCCAGAGAGAGTTGATTTCAAATCCCTGCTTTGTCACTCCCTTGCAGAAGTTTGTTGCAAAAGTCTGAGACTCAGTTTTCCCTTTTTTGAAAAAAATTTTTTATTTATTTGTTTATTTTTAAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGCAACCTCCGTCTCCCGGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGGCGCACGCCACCACACCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCGCCATGTTGGCCAGGCTGGTCTCAAACTCCTAACCTCAGGTGATCCACCTGCCTCAGCCTCCCACAGTGTTGGGATTACAGGCGTGAGCCACCACGCCTGGACTAGTTTTCCCTTCTTTAGAATGGGGTCATAATAGTATCTACCTCAGAATTACTCTAAAGATTAAATGAGAAAATCCACGTAAAGTGCTAGGTATGGTGTTGGGCATGTAGAATACTCCAAGTGGAGGAGTAATGCAGTTATGCAGATTGAAGAGGCAATGTGATAAGTATTCAATGGGAGTAAGTGTAAGGTACAGCACGGGAGAGTGAGATACCTAACTCAGTCTAGGGGTGCATTTTTAAAAGAGGTGATATTTAAGCCAACAACTGAATCACTGGTAGAAATTAGCTGAGTGAAGAAAGGAATGCTATTCCAGCAGAGGAAATAGCTGCACAAAGCCCATGAAGCAGGTAAGACAGCCTAGTATTTTGGAGGAACTTTAAGAAGTTCAGTGTAGTTGTAGTGATGTGGGGGAAAGGGGTAGGAAATAAGACTAGAAAGGTAAGCAAGGGCCAGATCCCAAAGGGCCTTGTATGCCTTTTTGGGGAGTGTGACTTCATCCTAAGAGTAGTGAGGGAGCCAGTGAAGTGTTTTGTCCCATTTGTGCTTTGGAGTGCTTACTGTGGGGTGCTGTGAGAATGGATTGAAGCAGGAGAGACAGGAGGCAGGGATACCGGTTTTGACGCTATTGAGGTAATCTAGGCTAAAGAGAACTGTGACCTGGTAGAGGAGATTTGAGAAGCACTTGGGAGGTAGATTTGAGAAAACTTGGCCTTAGGTTTGGATGATTAAGCAGAACGGAGCTCCATTCACTGAGATGAGAACACAGGGAGGCATGGGTTTGGAGGGAAGGTCCAGTAGGCTGCTGGATATGTGGGTCTGTAGCTCAGGAGTGATGAAGCTGGAAAGATTTGAAAGTGTGAGCACAGAGGTAATTGAAGTCTGGGGATGGTTCTTGGCTCATTGTTTATTGGTTGCGTGCTTCTCTCCTATTTCAAGTGGCTCTGCTGGTGAATGCTTGAACTGTTCCTCTTGTCTTCCTGTGATTGTTTAACCCCTTAGTTTGGGCTTCCCACCTCCTCCTGTGCACTTGAAGGGTAGCTCTGGGGTACAAACTTGTCTTTGCAATGCTCCCTCCTCCATTCGTCATCAGGGCTCAGCTTGGAACAGCCGTTGATACCTTTAAGCTTCACAGGGGTCTTGAGGTTAGAAGACTTGAGTCCTCAGAACTGGAAAGAAAAAAAAAATACCGGACTTTCTGAGGTGGTTATTTGGGAGGAGGTAAGCTCCCTACTGCTTGCGCAAGTGCAGGTAGAGATTCCAGGTGGTTCTGCAGAGATTCCATTATTAACTGAGAGGTTGAACTGAAGAGTCTTTGGGGTGTCTTCCAAAATGTGGCTTGGCTCTCAAAGTGACTCTAGGTGCTGGGACGAAAAAGAATGAGATTTTTCTAAGAGTCCCTGATTTCTGGGCTTGAAGGCTCTGAGAGATCACCCAATCCAGCCTTCCCCTCTACCTCTGTCCACAGTAGAAATTCATTATATTTGACAAAGACATTTAGCACAGTCCCTCACACAGACACATGCTAGGCACTCACTCATTTATTGAGTGAACAAACAGAAGGGGGTAGTGTAGAGTCATGCAGACCCTGACTTGAATCCCAACTTGCCCATTCTAGCTGCATGATCTCAGGCATGTTATTAAACTCTCTGCCCCTTAATTTTCTCATCTGCAAAATGGAGATGACACTGTTTACCTCACAGGACTGAGGATTAGTGAGAGCTGGTTGAACTGGAAGCACCTAGCAGAGCCTCAGTAAATGTTTGTTGCCCCCAGTCCCCCCAGGGCATCAGATGTAGCTTATTTGCAATCAGCCAGAGCCCTAGAGATAGTTTTTCTGTGTTGCTTCAGAAGCTGCAGTTACTGAACTCTTCCTGTCCTTCCCCTCCACCTGCCTTCACAATCCTGTTTATCAGTATGAAATAACTCTTGGAAAAACTCTAAAAAGGGCTGGGAGCATGGAGTAGTGTAAAAGAACGTGGAGTCAGGGATGCTGTTTTTCATTTCTGGTTCAGACCTTTGCTAACAACTCAGTGACACTGGGTGACCCTCTGTGAGGTGGGGACCACCTCATCTTCTTCCCCAAACTTCCTGTGCAGCCTGCATTCTGTCTCAGTTGGCTCCACCTCCTTCATCTTGTGCAAAAGCTAGAAACCCGAGTCATTCTGAACACTTTCCTCACTCCTCCTCCATCTCTTTCCTAATCTAATTAGTCACCAAGTCATGTCTGGTCTATCTCTGAAATAGCTTCAGAATCCATTCCGTTCTCTTCATCCCCAAGTGTGCTGTCTGGTTCATGCCCTGCCTGCCCAGCACCTGGGCTACTGCCTCCCTCACTGGCTCATCCTCCACACCGCCGCTGGTTACTTCTCTAAACAAGGTTCTCATCACGTTCCTCTCCTATTGGAAACCCTTCTATAGTGCTCTGTTTTCTCCGGCATAAAGCCCCAACAAAACTCTTTAGAGTGGTGTTCATTTGTCCAAATATTTGTGGAGGCTTGCAGGTGCCAGGCACTGTGCTGGGCCCTGGGGTGCCATGATGAGTGAGGCGCAGTGTCTGCCCCTGGGGAGCTTACTGTTGGGTGGGGGAGATGCTAGACAGAAACTACTCTTAGACACTGATACCTCACGGCTAACTGAAATGCAGGGGGAGAGGTGCTTGGTCAACGAGTGTATAGAGGGCCTGCCTTTCTGGGTTCACACTGCATTCTTGGCTCTGCGGTTTAACTCATTCCCTGAATGCACTATGCTCACTCTTAAGTCTGTGCGTTTGTCTTTCTTCTCTCTTCTGTCTGGAGTGTCCTTCCCTGCCTGCCTTTTGGAAAATGTCTATGCATCCTTCAAGGACCATTTCCAATATCACTGCCACTTCCTCCAGGAAGCTTTCCTTGACCCACTTCATACATTGTTCATTTATTCATTCTGCAAACAGCACAAATTCCTCCATCTAAGCTTCCTTGATAGCACATAAGTAGATTTTTCTGATGGCACTGATCAGATTGTATCACAATTATCTGTGGGCCCCTTAAGGGCAGGACTTCATTTACTTGTGTCCTCAGATCTACTACAGAGCCTAGTACAATATTGTCACTCTGAAAATGCGTGCTGAATGAAGTCCTTTAACAGCTCCGTGGCTTAGTTTCTTCATCTGTAAAAGAGGGCAACTAACATCTTCCTTTTTTCTGTTAGGAGGCCATTGGCAAGATTCTGCCTGTAGTGTTTGTGTTTGTGAAAGTACTTTGTAAACTACAGAGGAGGTCTTCAAATGCAGGACAGAAAGGAAAGGGTTTAATTGCTGCCAGACTACAATAGCCAGAAGGGCAGGAGACCTGCCTGGCAGCACCTGCTTTGTTGGCCTGGGGATGTTTCCTAGGTGGTTTATAGGTGGTTTCCTAGGTGGGTTTTCCTAGGTGCCAGGTGCGGTTTATAGCTTTGCTCACAGGGCTTATAGTGGGGCAGCTACTTCTGGCTTCGTGTCTGGCCTGTTCTTTGGGTGTGCCCAGATTCTGCAGAGTTCCCACTCCCTTTCCATCCTATGCTGGAATCCTGAGCCCTATTGCTTAATGAAGGAGTGTTGTAGCAGGAGGCAGGGGGAGTCATTGGGTGCAAGGGAGTGGTCCAGCCTTGTCTCTTCCTCCAGCTCACAGCATTACTTGGGCAAGTCCCTCCCTCCCTCCCCCATCTGTAAAATGGGGGTTAGGTTAAGTGACTTGTCTTCTGGGTATTTCTCTTGTCACACCTCTCCAACCCCTTGGGAATCCTGTTCGTTCTCTAAGTCCTAGCTCAAATGCCACTCTCATGGAAACACTCCCTGATTTTACCCTCCTTCCTTTGCAGTCCTATGGCACATGACTTATGTCTCCATTTCAAACACCTGTTTTCCTTATGCTGTTTTGTTAGACGTTACACAGTGTCTACATGTTAAGTCTTGTTAACTGTGAGTGCCTTCAGATTGCTTCACTCTCCTTTATACCCCACCCCGCACAGTTCACCTGGCCCAGGACTTTGCTGATAACAGTAATTAATATAGCAATAGCAGCTATGACTTACTGATCATTTGCTTTATGCCAGGCACTGTTGTAAAAACTATTTTTCTTATGTGAGTGGTTTTCAGACTGTCTTTTCAGTCACTGTGAGGGGTTTTCAGAGCCCCCTCAGAATGTAGCAAGGGAGGGGGTTCCATATTGTAGGGGCTCTGGAGCTCCCACCTTACTTCAGCCAGAGCAACTTTCTTGTATTTGTTTTATTTATTTTATCAAAGGATTCTTTCTTTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTTTTGGAGACAGGGTCTCCCTCTGTTACTCAGGCTGGAGTGTTGTGGCACAATCACAGCTCACTGCAGCCTCCAACTTAGGCTCAAGTGATCCTTCCGCTTTAGCCTCCCGAGTAGCAGGGACTACATGTGTACCACCATGCCCGGCTGATTTTTAAAAATTTTTTGTAGAGGTGGGATCTTACTATGTTGCCCAGGTTGGTTATCAAAGGATTCTTTAGCTAAAAATTAAACTGACAGAATTTTGCTGCATTTATTTTTTATAATCTGCAGAACAGTCCAGTGAGGAAGGAATTGTTCTATTTGTGAGGAAGCAGGCTCAGAGAGATGAAGCCACGGGCCCACAGTCATGAACTTAGCTGATGGGAGCAGAGTTTTAAATTGAGATCTGTGTGAGCCATTCTTGTCTGTGAAGGAGTCTTGCTAGTAGCTATGACAGCTTCTAGGGTAGAAAAGCTCCCAAGGATTGCTGAGTGGGTGACAGGGCCTGCTTCCTGCCCTCCCCACAAAAAAACCTCATGAATTTGGCCTTAGCCTTAAGAGTAATTATTTCAAGCTATCAAACACAATAAAAAGAGAAAGCCCAGGCTCTCAGTGGCTTGGCCACTGGTGCACTTACAGGTTGATCTAGAACGTATCTAGATGGTGCCGTTCTCGGAGCTGGGCCTAGCTGCTGTCTGTGCCCTTGAGCTCAGCTTGTCTGCAGATGTGTTGGGGCTGTGCTCTGCTGGGTCCTGTGCTAGCCATTTAGGGAGATGGAGCGGAACACTCCGAGGGCTACTGGTGTGGGAAGATGGATGAGAGAGGGAATGCCCCCATGTATGCTCTAATGCACAAATGCCCTGGACATAGAGCCAAGAGACCCAGGTTCTGGTCCCAGCCCCTCCACACAGCCTGTGTGTGACTTTCCTGGACTTGAGTCTTGTCCTCTGTAGGAGGCTATTATTAATAGTGTTTATTGAGTGCTTAATTTGTGTCAGGCCCAATGTCAAAGGGCTTCACATAGCTGGCCTCATTTCATTCACAAACTAACCTGAGAGGTAGCTATTATTATTCCCATTTTATAGCAGAAGATGTTGAGGCTTAGAGAGGATAAGTCAGTCCAGTTAGTAAATGGCAGAACCTGAACTTGAACTCTTGAACTGGTTGTTTTTTGTTTGTTTGTTTGTTTTGAGATCGGATCTTACTCTGTCACCCAGGCTGGAGTACAGTTGTGTGATCATGGCTCACTGTAGCCTCGACCTCCCCAGGCTCAGGTGATCCTCCCACCTTAGCCTCCTGAGTCATTGGGACTATAGGTGTGCGCCACCACACCTGGCTAATTTTTGTATTTTTTAAATAGAGATGTAGTTTTTCTATGTTGCCCAGGTTTTTAGTAGAGATGTTGTTTTTCTGTGTTGCCCAGGCTGGTCTCTAACTCCTGGGCTCAAGCAGTCTGCCCGCCTCAGACTTCCAAAGTGCTGTGATTACACAGCTGTGAGCCACCACGCCTAGCTGTTGAACTGGCCTTTGAAAGCATTGTATCGTATTGCCTTAGGAATAGGGTCTCCCCTGCCTGCCTCACAGAGTTGTGAGTGAGGATAGGGAAATGTTTTTACATCAGGGTAAGGAAGACATGCTGTGGATGAATCCATGCTATAGCTATGTCATTTGTGACTGATGAGGGTCAGGGGTGTGTGTTAGAGACTGCGTTTGCCCCATGAGTTCTGCAGATAGAGATGGGAGTACCACAGGATGGGCATTTGGAATTCTGTTTGATTCATTTGCCTATTCATTCATACAGGAAATATTTACCAAGTATCCATTCTACACTGGGAGCTGGGGATAAAGTGACAAACCAGACAGGATCCTAGCCCTTGTGGAGCCCCTTGATGTGCAGGAAAGGAGAGTTAGGAAAGGAGGATTTCAACCCTGACTCTGCAGGTCATTGGCGGGGTGACTTTGGGTAACTCGTTGCTCCTCTGGAAGCCTCAGTTTGCCCATCTGAGCAGTGAGATCATAATTCCAACCCTACCTATAGGATCAGTTGAAAGGATGGTGGTGGAAGTGCTTTATGGTTGTAAAGTGCCATACTCTGCCTAGTTTCTGGCCTCATCATTCTGACTGATATCTTGCTCTTCCTGCAG
Seq C2 exon
GGCTGCCCAGGAGCTGCAGGACAAGCACCAGGAGCCCCTCCGGGTAGCTACTACCCTGGACCCCCCAATAGTGGAGGGCAGTATGGTAGTGGGCTACCCCCTGGTGGTGGTTATGGGGGTCCTGCCCCTGGAGGGCCTTATGGACCACCAGCTGGTGGAGGGCCCTATGGACACCCCAATCCTGGGATGTTCCCCTCTGGAACTCCAGGAGGACCATATGGCGGTGCAGCTCCCGGGGGCCCCTATGGTCAGCCACCTCCAAGTTCCTACGGTGCCCAGCAGCCTGGGCTTTATGGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162517-PEF1:NM_012392:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134991=EF-hand_7=PU(1.4=1.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)