MmuINT0117784 @ mm9
Intron Retention
Gene
ENSMUSG00000028779 | Pef1
Description
penta-EF hand domain containing 1 [Source:MGI Symbol;Acc:MGI:1915148]
Coordinates
chr4:129784800-129798685:+
Coord C1 exon
chr4:129784800-129784894
Coord A exon
chr4:129784895-129798411
Coord C2 exon
chr4:129798412-129798685
Length
13517 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGTGTCTGTTCTTCCTGCAGAGT
3' ss Score
12.59
Exon sequences
Seq C1 exon
AAAATCCAACCAGGAGCGGCATTGGGAGCAGGAAACTCCGCCTACCACAGTTGTGTGACGTCATAACCGCCATGGCCAGCTATCCAAACGGACAG
Seq A exon
GTGAGTTGTAGTGGCCCCTGCGTCAATATTTGGGCTTGTCTATAGATCCGGTACCACTCTCCATCCTCGGCTCTTTCTCCCCACTTGATCCGCAGCCTTTTCACGCAGAGGTTTACTTCAACAAGACTCTGTGTGAGCGAGAAACAGGAGGGCCAGTCCGTCGCGCTCGTTTTACGTCACATAGGACCACTCGAGGGGTTGTTTATATTGCGCAAAACTGGCTTTGGGGGTTTTGCTGTGAATTGATCCGGGCTGAACCGGACCAGGGTGCTTAACTCAGGTCTCCGTGGGGCGGAGTCCTCTGTGCTCTCGAGGCGTTTAGAGCTCTTTTTCCCTTGGAGTCTTTCTGGGCGTAACTTGATAAAAACAAGTTGCCCGACTCTCTCAGCACCGTCCTGCGACCGAATAATCTCGGGACAATCAGTGGTAGGAGGTACCAGAAGTGAGATTACACCCCTCACGGTTGTCCAGCGTCCTTTCACACGTAGGAAAAGTGAAACCCAGAGAAGATATGGAGTTTATCTAAGTTACCAAGTAGTTAGGCAGCAGAGCCAAGGTCAGAACTTGGGTTGTCTGCAACTGCTTCTTCCTTCCTTTCTAGCCTGCCTTGAACCAGCCGGGAACATCATTTCAGTGTGATTTATTTTGTGGCCAGAATTAGGTGACATAGAGGTGCCAAATGCAGTTTTGAGTTAAAAGTGGAGCCAGATCTTTGCCGCATTAGTTTTAAGTCTTTTTTTTTTTTTTTTTTTTTTCCTGATCCAGTTTCCTCTCATAAAATGGACCAAGTAGTAAGAGTCCACCCCTCACAGAGTTATTAGGAAGAACGATGTGATTCCTGTAGGCATATGCTATGCTATACGGTAAAGTGTAACATCACTTTGTAGGAGTTTTCAAAGCAGGCCCCTCACTTCGAAATAATTTGGACAAAATAATCGTCCTGATCACAGAGTAGTTTAAGAGATTAGTCTCATGTATGGAAAGTGGAATGCAAAGTCAAATGGGTTATTACCAAGCTTTGATTGGCCATAGTCACAGACTAAAAGATATTTAAAGGCCTATGTGGTTTATATAGCATTTCTTACATTTACTTTGTGTGTGTGTTGGGGGTGGGGAGAGGGCGGCTACACATGTGCACATGCACAGGAATTATTTTTTTCTCTATCATGTGGGTCTTGGGGATCAACCTTCTTGGGCCTTTCAGCAAGCCCCTTTACCCACTGAGTCATCTTGCTGGCTCCCACACAGCAGTTGGGCCCCCATTGTGCCCATATGAAGACCCTGTAAGCATGCAGGGCTTATTATTTTGACTTATAGCTGAGGAGCAAACCCAGAGAGGCTTAGAGGTCTCACATAGCTGGTGAGGGTGAGGCCAGGGTTAGAGCTTTGAATTCCACTTATTGCATACTTGGCAGAAGTGAGTAGAGGCCAGTGTGGGCTCCAAGTAGGAAGAACTACCACAGCCTGGCTTCCCAGACTCCGCCCCACTTGCTGGGTTTTGTGAGATGTTAATGGGTGCTCTTGATAGAGGATCCTGTGGTTAAGCAAGCTTGGGAACTGCTCTGTTAATACAGCGTGGTAATGCTCACTGCAAATCTCCCAGAAAGTCATAGAATGCGTCATAGTCCTAAAAACTTTCTTAACCAGGGACCACCCTACCCCATCTGTTTTGAATTACGTCTGCTCATTGTTTTGTGACAAGCTGGTGTTCCACGGGAGCTCAGGTTGGGAAAGCATTCCCATAGTACATATTTTTAGTGGCTGGTTTGTATCAGAATTACCTGAGAGCTTGTTTAAAGGACAGATTTGGGCCCCATCTAAGACCTGCTCTAAGCTTAGATGGCACAGATCCCACCCCCAAATTGTGAGGGGTGTGTGTGTATTTACCTGTGTGGGGACAGTAAACATCTGTAAACCAAAAGTTGACAATTGAGTGGCTGCCTCAGTTCTCAGTTGTTCCCCAACTTATTTTTTGAGGCCATCTCTCAATGAACAGGGAACTCACTGAGCCAGATTATCTAGCCAGTGAGGGATCTTCATTGCCTCTGCCTCCCCGGGCATACTTTGTCCTACCTGGCTGAGGATCCGTGCAAGTAGGTTGTCTTGCTTTCATGGCACACAGTATACCAGTAGAGTGATCCTCCTAGCCCCAGTAATCTACGTCTTAATACGTGTTAGGAATGATTTGTATACACTCTAGAAGCAGTGTCCTGGGCAAGAATCCAGCTCTACCCACTTAAATGTTATATGCCCTTGGCTACATCATGTAATGGCTCGGGGCTTTAATTCTCTTACCACAGAAAGGGAGGAATAGGGCCTGTGGAAAGGGTGCGAGAAGGGTGGGATGCTGCACAGCCTGTAGGGAGCTCTGCAGTCACGGGTGCACAGGGTGTGGCGTGGCGGTGACACTCCCTGCCATTGCCGTGACGGTTACTTTGCCAGGCTGCCTGGGCTTCTGTTGAGGGCAGAATACTGAAAGGGAGCACTAGAAGGAAATGTCTGGAATAGAAGAAGAAATATAGCTTTTATTCCCACCTTAGAGTTGTCCGCCTCCTCATCCCAGGTGTTCTAAGAAAGGAAAACTGCTTGTTTGAAGTCATGCAGAGGCGCAGGCAGTGCTGCCTCCTTCCACCCACTGGATACTTCCGAGGATTACAGCCGTTGGTGGGAGTCACAGTTCCTGTAATTTTCCATTGCCTCCGGCCCAGGGTGCACAGGCGCTGCCTTGGTATTGAAGTAGCAAAAGTTGAGTGCCGTTTGGTTCAGTGAGGGAGCCTCCTTGATGGAACTCAGTGCTTAAGAGCTTGGTCTCTGGTTGGCACATCCCTACTCTGCCAACTTGCTTACAGAAATTGGTTGTGAAGACCTGAAGTTTGGTTTCCTGTTCTGTAGAATAGGGTCATAGCAGTGCCTACACCAGACTTCACTGTGACATGAGATAGAGTCAAGTGTGGCATGTAGTAAGTACTCCGCCTGGGAGAGGAGTGCAGAGATGGAGACTCTAAGTGTTAAGTGGGAGTGGGTTTAAGGTGTTAGGATAGTACAGGAGCGCAGCCCAGGGGTGGGGCAGGAAGGTGTAAGCTGGGGGAATAAGAAAGTGACATTCCAGCTAAGGAAATACTGTCACAAAGACCAGGAAGCAAGCAAGAAAGTGCAGTCCATAGTACGTTTTTCTTAGTGGCTTGTTTGTATCAGAATTACCTGAGCACGTGTTTAGAGAATAAGAAAGTCCAATATTTGGGGTGCAGTTTTAAAATTAGTCTGGTTTTAATGATGAGGGGCCAGAGACAAGAAAACGAGACCAGAGATATTAGCAAGGGCCAAATCCCAAAGGGATTTGTATGTCATTTTGAGGGGACTGATTTCCTCCTAAGAGTACTGAGGGAGGGGGGAGCTGGTGAAAGGGTTTGTCACATTTGTCCCTAAGAGCTGTAACTATGGGGCCTTGAAAGAAGAGATGGAAATGGGAGGGGTGAGGCAAGGGGCAGTTTCAAAGCCATAGAAATCCTCTACACGAAAGAACGACGACCTGGTAACGGCTGGTGTGACAGGCTGTTGGGAGGAATCGCTGAAGGAACAGGTTTACTTTGGGTGACAGAGGAAGGAAGGGAAGGCCCCTGAGAGGTCTCGAAGGCTTTGATTTGGATGACTCGGAGGCAGGAGATGGGAGCAAAGACGCATATGGTGGGAGGGAAGGTCAGGAGGCTGCTGGGTATGTGGGACTGCAGCTCAGGTCAGGGGAGATGAAGCTGGAAAGAAAGATTTTGGAGTGTCAGCACAGAGATGGTAATTAAAGTCTTGGGACAGTTCTTGGCTCGTTGTTCATTGGTTGCATGTTTCTGTCCTTTAAATATTTTAGAAGGCTCTGCTGGTGATGCCAGACCATTCCTTCTGTCTTCTTGTGGCTGCTTAACCCCTTAGCTCAGGCTTCTTCCTCTCCCATCAGGCACTTGAAAGGTAGCTCTGAGCAGGCTTGCTTTTACAGTGCAGTCTCTTCTCTTCCTCATGAGGAGTCAGTATAGACCTGCTTTGATACCTCTGAGCCTCTCAAGGGCTTGGAGGTAGGAGGAGGAGACCTTGGAGGTAAAAGAGTGCAGGAATTTCTGAATCAGGAGGGTCTGAGCGCTCTTGTCACCTGCAGGAGTGCAAATAGAGACTCTGTCAACTGTGAGGTTGAACTGAGCTATCTTGAGGTATAGGTGCCACAGTGAAAAAAACAATGTGCACTTAGATTCTCTCCCGTGTCCAGTGGAAAGCCATGAGACCTGACGGGTGTTTGACACAGACACATACTGGGCCCTCATGTGTGCAGGTGCTATTTAGAGTTCATGTCTCATTTCAGCTGCATGATTTAAAATATACTAGACGGGGGGCCTCTTCATTTTCTCGTCTCTAAAATGGGATGTGCATTTAGCTTTCAGGATCAAGGAACCAGCAAAAGCTGATTAAGTTAAAGCACCTTAGAGAGCCTCAAAACCCTGAAAAATACCAAATATAGCTTATTTTGATCAGCTAGGACCTAGAGATAATTTTTCTGTGATGCTCCAGAAACCATGGTTACTGAACTCTTGCCTTTTGCCCTCCGCCCCCGGTTTGTTTATGGATCTGAAATGCTGCTAGAAAGGTCTGCAAAGACCTGGGAGGGGTACACGGAGTCAAAGACCTGCCTCTCGTTTCTGTTTCAGACCTTAACTTGCAATTCAGTGACCCCGGGACCAACCCAGAGCCTTACACAAGCTTCCTCCCCAGCCTGTTGTGCCTCCGTTGATGGGATGGTTCTGCCTTGTTCATCATGTGCAAGCTGAACCCTGAGTCATTCTAAACACTTGGCTTTCTTCACCCCACCCGCCCCCATCTCTTGCCTAATCCAATTAGTTGCCAAGTCATGTCTAGTCTATCTCTGAAATAGCTTCAGAATCCACCCGTTCTTCCCATCCCTGCGCCTGCTGTCTGGTTCATGCCCTGCCTGCCCAGCACCTGGGCTGCTGCCTTCCCCCAACCCCCAGCTCATCCTCCAAAACCACATTGGCTAATTCTCCCAACAAGGCTCACAGCACATCTCTCCTCCTTAGGAAACCCTTCTGTGGTGCTCTGCTTTCTCCCACATAACTCTGCAGAGCAGTGCGTCTCTGTATATAAGCACTATATATGGAGACTTACAGGTACCAGGCACTGTGCTGGGCCTGCTGCAGGTGAGGATGGTGGTGGATGAGGGTGGTGGTGGTTATGATGATGGTGATGGTGATGATGAAAGAAACTCTGCCTGCCCCTAGGGAACTTCCTGTTGGGTGAGGGAGACATTGGACAGGCACAGATAACTCACCCACCAACTGAAAAGCAGCTGGAGTGGTGCTTGACCAGGGAGGGTGTAACAGGCCTTCCTTTCTGGGTTCACTGTGTGCTCTTGCCATTCCCTGACCACATCAGGCTCAGGCATAAGTCTGCTTTGTCTGTCTTCTTGTGGGTATAGTGTCCCTCTCTGCTTCTTTGTCTGTCTTCTTGTGGGTATAGTGTCCCTCTCTGCTTCTTTTGGTAGAGAATACCTCTGCATCTTTCAAAGACCGGCATGTCACTACTAGCTTTGACCAAAGCAATTTTGGGGGGAGAGGGATAGATAAATACATAAAAATAAATAAACAGTGTGCATGCTTATTTGTTTATTTGGTTTGTGCTCTTCCAAACTTATGTAGGGATGGGACATGGGACACTCTGGGCCTCCAGAGCCCCTAGCTAGTAGTGCACAGAGGTAGACAGGAGAGGAAATGTGGCTATAAAAGCTGCTGGTCTCTTCCAGGGGACCTAGCTTCTTCACCCGGCTCCACACAGTCTATGTGTGACTTCTCTGAACTCAGGTTTCCTTTCCTCTAGAGGGGCACTGTCATTAATAGTCACTGCTTGTGAAGATCTTGTTCCATCAGGCTTCGTGTGATGAGCCTCATTTCATTCCTGTAGCAAACAGTATGAAGCAGGCACTGTTACCTCAGGCTCCTGAGGCTTAGTGAAGGTAAGTGAGCTCCCAGTGCGCTGATACGTTTTCCTGAAACTACCTCTTTCATTCAAAGAGACAGAACTTTCTCCAGACCTAGCAGAGAAGTTAATGTGCCTTGAGATCAGTAAAGACCAGGTACTCGATCCGTTGTCTGTCATACTACGTACTCAGCGTGTGTAAGTTTAACCTGCCTTTAAGAGAACAGTGTAACCAACCTTACCTGCCTTGGATTCCTCATGACCCAAGCGAAATGCAGAGCTTTCCGTTTAAGTTATACACTCCCATGCCCTGACCCAGAACAGTGTCTGTGTTGTAGTTATTTGCTGGAGCAGCCAATGTCTCTGCAAGGTTTTAAGCACTGTTCTGGGGCAATGAAATAACTTCTTATAAAACCCTGCTAAAGATCTCTGCAGAAAAGTGTTCCTTAAGAGCTGCATGGTGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTTACAACCATCCGTGACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAGGACAGCTACAGTGTACTTAAATCAATCAATCAGTCAATCAATCAATCAATCAATCAATCTTTAAAAAAAAAAAAAGAGCTGCATGGTAGTGTGTGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATCTCTGAGTTTGAAGCCAGCCTGGTCTACAGAGATAGTTCCAAGTCAGCCAGGGCTGCACAGAGAAACCTTGTCTCAAAAACAAAACAAAACTAAACAAAACAAAGAAAAATGTCCTTCATTTCCTTCATGGGCCATTTTTCTGTGCTGTTCAGTAAATAAAGAGCAAAGACATTTGTTTGAGTTCAACAGAAGCAGTGAAGACACCACAGCCCGGCTTTTTTGTCCCCTCACTCCAACAGGAGTTGCTCTGTTTTTGTTCCTTATTACATGAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTCTGTTGTTTGTTTTGAGGCAAGGTTTTTCTCCCTAGCCCTGGCTGTCCTGGAACTCTCTCTATAGACCAGACTGGCCCTGAACTCACAGAGATCCCATCTCCTGAGTGCTGGGATTGCAGGTGCATGTGTGCCCCCATACCTGACTCCCTACTGTGTTAGTGATGAAGTTTGTGTTCGTGATTGATTGATCTAAACTCACATGAGCATCTGAAGAGCCCTAGGAAAAAGGGATTTTTAATTTTGGACATCTTGATCCCTCAAACAGACAAGGAACAAATGAATCTCCCCAAAACTCCTTCCTTGTCTACCTGTAGGGTGGAGAGACCCCGAGGACAAGGGAAATAGGATGCCTCAGATTGTCTAGACTGGAAGCCCCAAGAGCAGGGCTCATACCCACCCACGCTTATTCTTTTTCTCTCTCTCAACGCCCAGTGTGGCTCCACTTGTCAGTTAGTCACAAGGAGCCAGCGGGCGCTCCCAAAAGCCTGTTGCCTCTGACTCTTCTCTTTGGCTCTTAGACTGCTTTTACAGTGGGGAATTCTGTCTCCTGAAGCTCACAGGCATACAGAACAATTGAAAACTACTTAAAGGGATTGGAGCTAAAATGTCATTAAGACAGATTTATAAACTATAAGCTATATTGTCTCTGGTATCCTAACCATAGGACACTCGTATGATTCAGGAGTCTTGGGGAATAATTGGTGACCAATTACATTGCTCTGTACAACCAGCTCAACTGAAACATTTGGTCCTTTGGAACCAGGTTGGGTCGCCATACAGCTTTCCAAAAGAAAAAGACGTGTCCTGGGAATGTCTCCTATTGAATCTTTCCATCTCCACTGCCTCTGCCAACTGGTAACAATAAGTCATCCACACCCTTGAAGTGGCCTCCAGGAAGCTTCTAAGGCAGGAGAACAGGTGCCTGCATTTCCAGTCTGGAGTAGGACCAAGCCCTGCCCATGAGGGGCTCCATTTGCCACCTAAAGAGCTAACAAAACTTGTCACAAAGAATGAGGTTCAAACCATTTTACTAGATGAGTAATGGTGTTATTGCAAATACATATAACTGATACCTTCTGACTGGCAAGCCCTTATAAAAACAATTTTTACCACTGGTCACACACACACACACACACACACACTCTGCTACTTATGATCAGTTAATCAGACAAGGAAAGGTTGGACCCCAGGCTCAGCAGCTTTCGAGCCCTGGGCTACTACAATGGCTACAAAGTTCAAAAGTCTACAGAGCCCTTTATAGACCATGTTGGTCACCCACACAGTGAGCTATGGAAAACCAGACAGATAATAAAGATGTTACTGTCATCTTACCTTTCAATTAGCTCTCAAAAAAATGCAAATTCTTACTGCAAAACAAACAAAAGTTCCCTTCTGGCAGTGGTCCTGTAGCTTTTTAATCCCAGCACACAGTAGGCAGAGGTAGGCTGATCTCTGTGAGTTTGAGGCCAGCCTGGTCTAGAGAGCTGGTTCTAGGACAGCCAAGGCTACATAAAGAAACTGTCTCAAAAAAAAAAAAATAAAACAAACAAACAAAAAAAGAACCCCTCTTCTTCATTGTGTACTTGCCAATCTTTTTTATGGTATACTGATAGAATAAAAGCCCACAAAAGCCTTGGCACAGAGGGGCTGCCGGCTGAGACACTGCAGCAGCCTTGTAGCCCTCTAGGTTTTAAATGTGGAAAAAGAGGTCATTTCCAAAAACAGTGTAAACAAACTTACTGATAACACCAGTGTGGTAAACCTCTTCCTGATGGGGAAATGGTTGCACTGGGCCAGTCAGTGTCCATCTAGAGGTGATAGCGAAGACAATCCAGTTTGGGGGACACAAGACTTGAGTGCCAAGGGTGGCTGGATGATACAAGCAGACCCTCTTTGATTCCCAGCCTGTGGTGCCAGTGCCCTCCCCCTGTGCTGCCTCTGTGAGAGCAGAGTCTGGAAGCAGTTTCCACACCTTGTGGTGTCTCTGCCGCATGCCACCCAGCTCCGTCCCAAACCTAAAACATTAAGAGGTTTAATTACCAAAAGTAATTCTAGATTAGATTTATCTATAGTTAAAGCTATAAAATGAGATGTAGTAGGAGAGGTAAAGAGGCACCCACAGATGTGTGAGAATCCCTTCCAGTGAATGCTTGACTTGTCTTTAGATAAATCAGACCGGACTCTAAAAGGAGTTTGGCTTGCCCAGAGCTCTTTCACAAGTCAGATTACAGTTTATTCCCAGCTGCTCCAAGAAACTCCAAATTAACAAAATTGATTGTTATTCTATACATAACCCCCAGACCCTTGATAATGGTTGCTAAGCCAAGAACTTGATTCCTCAGAGCACCATGGACTCAGTTGGTGTTTGTATGACTGAATCCCCATGAAGGGCATTAGAGACACAACAGATGGCATTTCTATTATTGCTAAATAATCCTGGCCTTCCAATTGGCACATTCAGTCCCCAGTTTTAGACTTTCAGTGAGTTAAAGACAAAAGTAATAGTTTTCTGAAATCAAGCTGCCATTTTTTTTTCATTCCGTTATGTCACCCTTACCTTTCTTCCCTGGGTTGGACACCCCCTTGTCTCAATGGGGTAGTGACAGTTCGGTATCTAAATGTCCTTTGCCCTTGGGGCCATGAGAAATATCTACCCAAACTTTCTTGGATAGAAGTTCCCCCAATTGGCAAAATTAATGGTCAATGAATGGGAACAAACTTAGACAGCTACATCAGCTAATCCAGGAACGACTTCAGACAGACCATATAGAAGTATTATTTAGTGCATGGAATAATCCTGTTTTCTATACCTCCCAAAAGTTTGTTAAATGGAGGCTTTCACATGATCTCTGTGTTGCTAATGCTTGTCTTTATTCCTCGGTGTCACCCCCATTAGAGTTCACTCAGAACTACCATGTTATAGTTACTGATTTAAAATACTGCTTTTTTTTTTACTGTTCATGCTGATGATATGAAAATTTTCAGTGCCTACTGTCATAAGCAAGCACCTATCTCACTCCCATTGAAAAGTACTTTGCCAGCCTCCAGTAGGAGGTATAGAATTTACCTACCATGAATTCACCTTACTGAGCAAAACTGGCCTGATACTTACATATTTCATTATATGGATGATATCCTATTATGCCAAGTCTGGCATGGCTGCAGAAGGGACGATGTGACATGGTTCCTGCCCCTGGAGCAGAGCCAACTAGACGGGTCTTCTCAAGTTGCTGTAGGAGCAAGGCTTCTTTGCATGACGATGTACATACTTTGCTTCATGTTCCTCCTTTGGAGAATGTTCTCCAGGCCAAGGTTAATGACTCCGCGACAGTCTGAAGCAGCATGATTCTGGGATGTTCCTCAGCAAAATGAATGCTGTGACCTTCAGGATAGTCCTTAAGGCTGTGGGGAAGAACTCTGAAAACATGAGTTCAAGAATATATAAATTAGTGTAAGAACTATTCTTTACAGGATTTTTCAATTGTGCAGAATATAAGGATTCAGTGTGAATTGTATGAGGGGCTTCATGGACCTGAAACAGAGAACAGAGGCAGCTGCACTAGAGTCAGTCAGGAAGATGTTAAGGAAGGAGATGTGATTTGGTCAATAGAGGGAAAAAACCTGTGTAATGAGAGAGAAAGGAATAGTTAAAAACAAGGCTCAGATAGATGGTTATATGCCATCAGTAGTAAGATGGTGGTCTTCTCCACAGAAGCCATCAACAACTAAATTTGATCCAGATAGTCTTCTAAGAATTATAAAAAGGAGTCTTAATGTTGCTTGTATCAGCACAAACAACTTACTAAACTAAATAAAAAGTTTATGGTTCAAGTAATAAAAGTGAAGTGAAATGTAGCTGATCCTGTGTTCAAGGAGATAAAGAGATTTAGGAAATGGTGATCTCAGGGCAAGATCTCACCAAGCTAAGCTTATTGTCTGTGTTTGCTTTTGAATAAGAAATACTTTGGGCTTTTATTCTGTAGTGAACTACAATCCAGAAATAGAGCACACTTGTGATCCAGATCTTGAAGCTGGAAAACACAGGTTTTTGGTCTGGATCTTAAGGAACAGTGGCCATGAAAGCTTACACCCAGGCATGGTGCTACACACCTTTAATCCAGGAGACAAAGGCAAGCAGATTCTGGAGTTCAAGGCCAGCCTGGGACAGAGCAGGTTCTAGGTAAAGAAAAGTTTAGGTCCAGGCGTGGTAGTACACGCCCAGCATTCAGGAGACAGAACCATCCAGATCTCTAAGTTCAAGGTCTGTCTACAGGGCACATTCTAAGTCGGCCAAGCTTAGACAGTGCAGAAAAGCTAACTCTCTCACATAAAAATAGTCGCTACATCTAGACTTGGCAACCATAAACATTGTGCCTAGTGAACCACATAGGACTTGCTGTGTGTAGAAAATATGTACTTGCTGTCTTTTTCTAAGTGTCAGGGGACTAAGGTCATAAAATGCTGATTAGTGGGAGAATCAAAAGAGAACCTGGGACCGGGTAGTGGTGGCACACTCCTTTAATGTACTTGGGAGGCAGAAACTGGTGGATTTCTTTGTTGAAGGCCAGCCTGGTCTTCAAAGTGAGTTCCAAGACAGCCAAGGCTATACAGAGAAACCGTTTCTCGAAAACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAAACCTGGGATAAAAGATAGAACTGATATGCAATTCCTAAGGAAATAGCTTATACAAATAAAAAGACAGGGCTTTGGTCTGCATGAGAGCAGAACACTGAGCTGTCAGCCTGCACCCAGCATTGACTCCGAGCCATTCTTCTGTCACTCCCTCAGGTCCCTCTCCCAAGTCCAGGCTGGTCCTTGGCACCACTAGCCTATTCTATTAAAGATATAAATCTGTTTTTAAAGAATTTACAAACGTCAATAGAAACCTTTGTTCATTTACAGTTTGCCCCAGCAGAGTTCCGCTAGGTGTCCCATGCTAGTTACAGCTAGTGGTTTGAGTCCTGGAACAAAGACAGCTTCCCCAAAGATGCTTAGATTTACCCTTCTCTGTCTGTCTGTCCTTCAGCACTCCTTTCCCCTCAGTCATGAAATGTTTTTAGCTATTTTTGGATGGTTGTTTCTTTCCAATATACCTAACTTTTGTTCCCCCAAACCAACAGAGTGACTCTTTTTTTAAAAAAAAATTATTTATTTATATTTTATGTGTATTGGCATTTTGTCTGTGTGAGGGTGTCAGATCTTAGAATTATAGACAATTGTGAGCTGCCATGTGGGTACTGGGAATTGAACCCATGACCTTTGGAAGAGGCAAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCAGTGACTTTTTTTTTCTTCTTTTGGTTTTCGAGATAGGGTTTCTCTGTGTAGCCATGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAATTCAGAAATCCTCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACACCACCACGCCGGCTTCCAGCAGTGACTCTTAACAGCATAGACCCAGAGCTATCGTCTGGACAAGCCCTTGATACTTTTTATCTTTCTGTATCTCAAAATAATTTCAATTTCTTTCACAAGCCTCAGAAGAAATTATTTTGGCGGGGTTGGGAGGGACAAAACTCTTTCATTCCATCCTATAAGGACTCTATAATTCCATTGCTTCCGTGTGTACTTTCTCCAAAAAGTACACACCCTGTTTCTAATACACTAACTGTTCTTTATTAGGGTCTCACAGAAGGCAGAGGGAGAGAGTGGAGGATACATATTTGGGTTGTATCTTGTTTAACTGCTCCAAGAGGAAGTCATTCCATTCTCCTTCCTTAATGCATTAGTGACATGAGTCAGTGGGGGACAAACCTGAACTGTGGTGTCTGGTCATTGTCCCTACTGCCCTGTGGATAGGCTCTCCGCCTGCCTCAGAGCATGAGGCTAGGGAATATTCATGCATCGTCAGCGAGTGAAGGCAAGGAGGGCCTGCTGTGCAGGGTCTATGCTATGAGTACATCACTGGTGGCTGATGAGGGCCAGGGCTGTGTGCTGTGAGTTCTGCGGGTAGAGGTGGAAGTCCCGAAGGCTGAGCATTCTGCTTGATTCATTCATCTGTTCAGATAAGTACTACTGAGCATCCATTGTATACTGAAAGCTAGTGATAAAGCCACAAGCCAGGCGTGACCCCAGGCCTTGTAGGACCTTTGACTGCAGGAAAGAGGAGTCAGGAGGGCAAAATTCCAACTTAGACTCAGTACGACCTTGGCATGACTTTGAGTAACTAGTTGCTTCCCTGGAAGCCTCAAGGCCACCTAACCAAAGAGCTGAAAGTCCAACCTCACCTGTAGAGTCAGTTATAAGGATGGCAGTGTGGGTGCTCTGTAGCTGTAAAGTGCTATGCTGTGGTTTTGCTCATCATCCTGCTTGTGTCTGTTCTTCCTGCAG
Seq C2 exon
AGTTGCCCAGGAGCTGCAGGACAGGTGCCTGGAGTACCCCCGGGGGGCTATTATCCTGGTCCTCCCCATGGTGGGGGCCAGTATGGCAGTGGACTGCCCCCAGGTGGTGGCTATGGAGCTCCTGCCCCTGGAGGACCCTATGGATACCCCAGTGCTGGAGGAGTCCCCTCGGGAACTCCAAGTGGACCATATGGCGGTATACCTCCAGGGGGTCCCTATGGTCAGCTACCTCCAGGGGGTCCCTACGGTACCCAGCCTGGACATTATGGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028779-Pef1:NM_026441:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.989
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: