HsaINT0123938 @ hg19
Intron Retention
Gene
ENSG00000077684 | PHF17
Description
PHD finger protein 17 [Source:HGNC Symbol;Acc:30027]
Coordinates
chr4:129764108-129767687:+
Coord C1 exon
chr4:129764108-129764193
Coord A exon
chr4:129764194-129767529
Coord C2 exon
chr4:129767530-129767687
Length
3336 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
CCCTTTCTCTTCCTTTCCAGGTG
3' ss Score
14.68
Exon sequences
Seq C1 exon
GCCTGTCAACTACTTGGTCCCAGAATTCCCGATCCCAGCATAGGAGAAGCTCCTGCTCCAGACATGAAGATCGAAAGCCTTCAGAG
Seq A exon
GTACTTCTTGAATGCTTGCCTGACCGTGCATGAATATATGCTATCCCATATGCCTAGTTGAGTGGTATCTATTTGTGCAGTCCTGGGCAAATTATTCAAATCCTTGTGCTCCAGTTTCCAAATCTGTAAGACGGGGAGAACACAAGTGTCTACCTCATAGGATTGTTGTGAGGATTAAGTGGGTTAATTCACATAGACTAATACATGCAAAGCATGTGAATAGTTGCTGGCACATAAAAAGTGCTCAGTAAATGTTAGTTATTATTATTAATTACATTCTTTTTTTCCTTTCTTGTTGCATCTTCGCTGGCTCCCAACAACTTTTCTTCCTCTGGCCAGGATATCAGCAGGTTCAGCTGCTGCCAAGTCACTGCCAGCCTCAAGTTAGTTTTAGCCATGGGTTTGTGGCTTATTTGGCAACAAGCAAAACTCTGGGACTTTTGTTTAGGGGATTATGCTGAAGGCTTTCCCCATTCTTTCTCAATTTGTTTCTCATCTTATGTTTCCTCTGCTCCCTAACTTTTGTTATCTATCTATCTAAAGTTGCTTTTAGGTGCATTTCTTTCTGCTGGTCTTTGTTTAGGGGTCCTTATGAGACCTGAGGTCTGTTTATTCTAAAGACTTTTGCTAGGCTTTAAATCATCGAAGAAAAACATTTTATTTTATCACAGTTTTCAAGTGAGAAGGTTATAGGAAGAGTTTCTTTGGTTGAATGCTTTGCTTTGTGCTGCTTCTTATGGGATGAGTTCACAAACAGCCTCATCCTGTAATGGCAATGCATAGGCAGATATTCCTTGGAGGAACTTCCCAGGCTCTAATAGGGAACGTCAGAAGGCTGCCCTGCTGTGGAGTGGAGGAGTTATTTGGTTGTGGAATAGCTTCCTCCATGAGGAAGTAGTTTACATCCTTTAGAATTGTGGAAAACCATCCCAGGAGGCACTTTAGCATGAGATCAAATGTACTTGGGAAGGTAGCCACTTCTTCCCCTTACTTTATTTCAGGCCTTTTTTCCTTTGAACCTTTAGTGCTCTCTTCCTTTTCTTTGCCAAGGAGTGTCTCTGCTGCTCTTTATTTCTTAATTCCTTGTGCTGTGTCTGTAACCCCCAAAATACCTTTCTGATGTTCACACTAAACTCCTGTTACTTCAGCACAGGAATACAAGGGGGACTTAGCAGCTGTGACCTGGTGTGACGAGGGCTGGTCCCCAGTGGTGTAGTTCGAAACCTACTTCCAGCAGTGACACCAAGCATGGAGAAGGGGGCCCAGCAGCACGGGTTGCTGTGCTGGCTTTGTCCCAGCCCTACATTTTGGTCCAGATGTTTTTCTCAACCCTGAGTCCAAACTATATGTATGGCACTAACATACTCTACCAGAGACTCCAGAGTTGACGTCCATTTGAGGGCCTTTGTTTCAGTTCTTGACTGAGTCTTTGAGCAAAGGAATAGCAGGCTGCCTTTTTTTCATTTCATTGCTTCAGTTTGATTTTCTTTCTTTTTTGGCAAACTCCTTTGTTTTTTATTTATATCAGTTAGTTGGAATATGTTTTTACCTGATTGGCTCTTGAAGGTATAGGCCCATCTCTTAGGTTTTAAAGTACTTTTCTCTTGGGGGCCAGGGAGTTGGTGTCCACTGGGCTGGGCACCTGCTTCTGCGGCTCTATGCTTGAAGGGAAGGATCCTGGTATTACACGTGATTTTTGTGGGAGGTGCATGGCCTAATTCTTGCTTGTTAATAGGTCTTTAGAAATGAAGAGTGGCATACTGGGGAATAGTCCGTATGGAAAATGACAGGCAGGAGAAATGGCCTCTTTATTCAGACACTGCCTCAGACTTTATTATGGGGAAGTTTATTAAAGTGATCACTAGCCTGAAAAGCCACCAGGAAAAACAAATATGGACCTATTAGCAGGCGTATGATGTGAACTGTGCTTAGTAGCACAAGAAAGAACTCCCTGTCCTGAGAAAAGAGAGTTCAGCATTGTGACTTGTGTAAACAGACAGGGCAGCTTACAGATGCAAGCTTGCTCGATGCCAAACACAACTTTGGGCTGGTCCTGATGTCAAGGTCAGAGCTTTCTTATGCAGCCTTAGACACCAGTGGGCCAAGGACGAGGCTTGAGAGGGAGCCAGCTGTGCAGCCCTGGCTGGGAGGCGGTGTTGTGCTCCACCCCAGGGGCAGGCCTCACTGACCAAGGATGAATGCCACAGGCCCAGGAGTCTGCAGTGGCATAGGCACTGGGATGGCTGCCTTTCCTGTGGTTTCCTTCATTTGGCCTGTGATAAGGAATTGGGGAGCTCTCTCGGTAGAGGGGCACTGTTGGATCTGCCTGTTTTTGGCAGAGTGGGGAGAGGGTAGTGACTTTCTCTATTTCCTTTCCCCACAAATAACTCTTCCCAGGTAGAAGTTTTGCCAGGTGAAGGTGTGCAAACATGTTTTTTGCAGGCCCATCAACCCAGTGGCCTGTGGTTGCTTCTCTTCCAGATTTTTCTAGGCCAGCCCAGACCTTGACTTCACCAGCTACCATACCATAAACCCTGGTGCCCTGGGAGGTAGGGCCTGGGTGGGGGCAGTCTCATTATAGAAGGTGAGTCCCTGGCCAGGAGCAGTGGCTCATGCTTGTAATCCCAGCACTTTGGGTGGCCGAGGCAGGTAGATCATTTGAGGTCCTGACCTCAATGGTTTGAGACCAGCCTGGCCAACATGATGAAACCCTGTTTCTACTAAAAACACAAAAATTAGCTGGGCGTGGTGGCGTGCACCTGTAATCTCAGCTACTCGGGGGTGCTGAGGCAGGAGGATAGCTTGAACCTGGGAGGCAGAGGTTGCAGGGAGCCAAGACTGTGTTACCGCACTCCAGCCTGGGTGACAGAGCAAGATTCCATCTCAGAAAAAAAAAAAAGGAGATGAGTCCCTGGTGGTTCTGGGTTTTGGCTTGAAGTTGTTACATGGTTAGTGGAGTTATATTTCTAGAGCACCCTTGAGTGCAGTATCTCCCTTCAGAGATTTCCAGGTACATGTTTTCAGCAGCCCTTTTGGTGAACTGAGAGACATTTTTCAGAGGCGGACAACAAGATTTTTTGTTGTTTTTGTTGACGTTGTTGTGGACACTATGGACTGAGGGAGTGAGAGGGCAGTGTTCCCTCAGCACTGCCACCCCCCATGCCTGAGTGAGGTAAAAGGCGTGTCAGGCAAAGTTTTTCTGTAATAGGTCAGGCTTGTTCTATGTTGATACAGTGACCTTGTTACATGGCAGCTCCATGGTTACATTGCAGCTGCCAGCACTCTGAATAAGAATGCAAATATCAAATGTCAGTGTCCCTTTCTCTTCCTTTCCAG
Seq C2 exon
GTGTTTAGGACAGACCTGATCACTGCCATGAAGTTGCATGACTCCTACCAGCTGAATCCGGATGAGTACTATGTGTTGGCAGATCCCTGGAGACAGGAATGGGAGAAAGGGGTCCAGGTGCCTGTGAGCCCGGGGACCATCCCTCAGCCTGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077684-PHF17:NM_024900:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=NA C2=0.318
Domain overlap (PFAM):
C1:
PF105134=EPL1=PU(11.1=58.6)
A:
NA
C2:
PF105134=EPL1=FE(34.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)