MmuINT0118746 @ mm10
Intron Retention
Gene
ENSMUSG00000025764 | Jade1
Description
jade family PHD finger 1 [Source:MGI Symbol;Acc:MGI:1925835]
Coordinates
chr3:41588934-41591840:+
Coord C1 exon
chr3:41588934-41589022
Coord A exon
chr3:41589023-41591682
Coord C2 exon
chr3:41591683-41591840
Length
2660 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
TCCCTTTCTCGTCTCCCCAGGTG
3' ss Score
13.71
Exon sequences
Seq C1 exon
GCTTGTCAACGACATGGTCCCAGCATTCTCGATCCCAGCATGGGAGGAGTAGTACCTGCTCTAGACCTGAAGATCGAAAGCCTTCTGAG
Seq A exon
GTACTTCTGAATGCTTGCTTGCCTTGATCATGTGTGCTGTAAGTAAGTGCATGCGAACCTGCCGCCCACATGCCTGCCCCATGCTGTGCAGGTCTGGGCAAGTGCCCCACTTTATACCCCGGCAAGATGGTGAGAAGCAGATGTGTGCCTTGTTGCAGGAAGAAGTGAGCTAATTAATACATATAGGCTCGAACACGCAAAGCATGTTACACGTATATCATGCGCAGTGAATGTTAGCTATTATTATTAATTGTATTCTTTTTTTCCTTTCCTGTTCCGTCTTCGCTGGCTCCCAACAAGTTTTCCTCTGGCCAGGACATGAGCGGGTTCAGCTGCTGCCAAGTCACTGCCAGCCTCAAGTTAGTTTTAGCCATGGATCTGTGGCTTATTTGGCAACAAGCCAATGTGACTCTGGGAGTTTCGTTATGCTTAAGGCTTTCCCCGTCTTTCCCAATTTGTTTTCACATTTTATGTTTCCCTGATGCCCTACGTTTCGTTGTTCATTTCCCTGCTAAAATCATTTTTAGAGGCATCTGTCTCCCGCCAGCCTCGGTTGCTTAGGGGCCCCGTTGTCCTGAGACCTGCTTTCTCTGCGGCCATTCCGAGGCGCCGGGCATTGAGACCCAGGTGTCTCAGCCTGTCGGGTTCTCAGGGAAAGCTGTGGGAAAGTTGTTCTGGCATTGCACTGTTTGTGGGATGAGCTCAGTTGGCTTGTGGTGTGGTGGTCACACAGCGACAGGTGTTTCTCAGAGTCCCTTCCCATGCTGCCCCCATATAGCTGGAGAGTGCCTTGTCTAGGAGCGGAGGAGTTTCCTGGAGATGGAGTAACATCCCCTGCCAGAAAGCACTTAAGAGACCTGTTCCAGCAAACACTCACGGACGGCTGCTGTGGCCAGTGCTGCTGGCCTGGTGTCTGTTTTGACCTACAGTGCGCACTTTATTTTTTTGTGACATCGGAACGTCTCTGCACCTGTATTTTACTCTGCTGTTAAGTCCTGAGTCAGCTCTTAACTGCTACTACACCTTTCTGGTGTCCATACTATACTGCTGTTACTTCAGCCTGGGAGTGGGATTGGAGCCCTCTGAGCAGCAGGCACCACACCCTGTCCTTGCCTGGTCTGTGTCAAATCTTCTGAGTGCAAAGTGCTTTGTACGTAAAGCACTCGGGTAGCCGTCACCCCTGCCCTTGGTGTCTACTTGGCACTGAGCTTTGGGCCAGAGCCTCTCCCAGGTCTGTAGGAATGGAGCTGCCTTTTCTCATCTCCTTCCTCAGTCTGCCTTCCTTTCTTTGGCAAATTTGCGTGTTTTCTTGTACAGCTTAGCTGGGCTCTCTTTTACCTGATTTGCTTGGTGTGGACTCACAACTTTGACCTCAAAGCCCTTTTCCTTGGGGTTGGGTTGCTGTAGGCTTATGATCAGGGGCTTTTGTCTCATGGTGAGATCTTTGCAGAAGGGACACAGTCAGTCTGTTGCTTAATGGGACTGTAGATGTTAAGAGTGGCATCCTGGCACAAGACCAGTATTGACAATGACAGCGAGAGAAGCGGCCTTTTAATTCAGACCCTACCCCGTACTTTCATAAGATGAAGTTTATTAAAGAGAACACCAGTCTGAAAAGCCAACAGGTGTATACTGTGACCCGTGCTTAGCAGCACAAGAAAGCGCTTCCTGTCCCGAGTGAGGGAGTGCATTGCATCTCTGTGGCTCTGTACACTGAGCAGAGCATCTGGATCCAGGCGCATGCTGCTCGTGATACATGGCAGGGCTTCCTGGTACACACATCCTCACATGGCAGTGGGCTGAGGACAAGGCCGGAGAGGGAAGCAGCTGTGTGGCCCTGGCTGCCAGACAGGGTGCTGTACGGTCAGTCAGCCTCGTCGATTCGGATGGCAAGGGCCCATGAGTCAGGGGTGCTGCCTCCCCACAGTTTGCTTATCTTTGCTGTCTGTGATGAGTTAGGGTGCTTTCTTAGAAGGTGGGCACAAGCTGAGTCTTGATGGCAGTGAAAACAGGGTTGGTTCTGTCTTTCCACAGAAACTTGCTTCCAGGGCTGACGGCATCCTGTGACGTGGGACAACAGGGCTCTAGTGTTCCACTCCTAGATGTTTGCAGGCCTGCATTTCTGCCTGCTGTCAGCCAAAGTGGACCTTGCTCTCACCACCCGCCTGCCCCATGTGCTAGCACTTCAGGAGATTGGCCGCTTCTTTAGCAGTTAGTTTAGAAGATAGTGACCTCTACCGGGTGGTTCTAGATTCTGCCTTGAGGTTAATTGGCTAATGAAGTTTTGTTTTAAAACATGGGCTCGAAAGAGAGCTCTCCGTAGTGGCTTGTCATTCCCTGAAGGATTTCCAAGAGCCTGTGTTCAGCAGCCCTTGGTGAATTGAGAGGTCTTGGAGAGGGGAGCGGTTGTGTTTTGTGCAACAGTTATGTTGAGTCGATACAATCACTGCACCCTCTGCTTGTGTCGGCTGAAGGAGCTGGAGCCCACTTCAGTCCTGGGCGAGGGGAAGGAGTGTCGGGTGGAGTGAAGGGTTTCTGTAACAGGGCACTCTTACTCTGTTGATACCGTGACCTTGTTATGGGCAGCTCCATGGTGCCCTTGCAGCTGCCAGTGCTCTGAAATGAATGCCTGTGCCACTGTCCCTTTCTCGTCTCCCCAG
Seq C2 exon
GTGTTTAGGACCGACCTGATCACTGCCATGAAGTTGCATGACTCCTACCAGCTGAACCCGGATGACTACTACGTGCTGGCTGATCCCTGGAGACAGGAGTGGGAGAAAGGGGTCCAGGTGCCTGTGAGCCCAGGGACCATCCCACAGCCTGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025764:ENSMUST00000026865:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.335
Domain overlap (PFAM):
C1:
PF105134=EPL1=PU(10.5=53.3)
A:
NA
C2:
PF105134=EPL1=FE(34.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types