HsaINT0123941 @ hg38
Intron Retention
Gene
ENSG00000077684 | JADE1
Description
jade family PHD finger 1 [Source:HGNC Symbol;Acc:HGNC:30027]
Coordinates
chr4:128852057-128855797:+
Coord C1 exon
chr4:128852057-128852268
Coord A exon
chr4:128852269-128855629
Coord C2 exon
chr4:128855630-128855797
Length
3361 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GATGTGCCGTGGCATCACAGGCC
3' ss Score
5.05
Exon sequences
Seq C1 exon
GAATGCCTGAACTAGATGAATACACCATGGAGAGGGTCCTAGAGGAATTTGAGCAGCGATGCTACGACAATATGAATCATGCCATAGAGACTGAGGAAGGCCTGGGGATCGAATATGATGAAGATGTTGTCTGTGATGTCTGCCAGTCTCCTGATGGTGAGGACGGCAATGAGATGGTGTTCTGTGACAAATGCAACATCTGTGTGCACCAG
Seq A exon
GTATGTGGGGCAGGGAGGCCAGAAAGAAGAAACCTGGGGCATGAGCCTGTCTGCTGTGGGAGTGTATGCCTGGAGTCCAGGATTCTTCCTCCGAATGGGGTCTGTGTTTCTACGATTTAAAGAAATGTGCCCTATAGACTTTATTTTTCCCTAGTAGGTTCTTACAGTGATTGAAATATATCCTCTGCTTTTGCAGCCAGAAGGATAGCACCCTCTGTGGAAATCGTCTTTCTTCACAGTGTTTTATTCTTATCCATAAAAGTCAAGTTTACTTAAAAAGAATGTATGAGCCCCCTCTGTCCTACTGTAACACTTAAATTTAGGTATTAAGAACACTGAGAAAACAAACCTTTGAAAAGGTGGTTAGTGTGCTGTATTAGTTTCTTACAGCTGCCCTGTGGAACAGACAAATTACTACAGACTGTGTGTGCTTAAAACAACAAAAATGTATTGTCTTGTGGTTCTGGAAACTAAAAGTCCAGAATTGAGGTGGTGGCAGTGCTGTGCTTCCTCTGAAACATGCAGGAGAGCCCTTCCTTGCCTCTTCGTAGCTTATGGTGATTTGGGCAATCTTGGGCATTCCTTGGCTCGCGGCTGCCTTCATCATCATGTGTGTTCTCCCTGTGTCTCTGTCTTCACATGGTGGTCTTCTTTTTTTTTTTTTTTGAGATGGCTGGAGTGCAATGGCGTGGTCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGTGATTCTTCCTCCTCCGCCTCCCGAGTAGCTGGGACTGCAGGAGTGTGCCACCACACCTGGCTAGAGATGGGGTTTCACTATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGATCCGCCCACCTTGGCCTTCCAAAGTGCTGGGATTACAGGTGTGAGGCACCGTGCCCGGTCCACATGGCGGTCTTCTTAGAAGGGTACCAGTCGTATGGGACTAGAGACCCACCCTACTTCAGAGTGAGCTCATCTTAAATAATTACATCTGCAATGACTACTTCTAAATCTAAAGAAGGTCACATTTTGAGATATTTGGAGTTAGGACTTCAACATGTCTTTTAGAGGACACAATTTGCCGTCATATTTGTGAGCATGTGTTAGGGTATAAGCTGAGCTGTTAGAGGAAAGCAGCCCCTTTTCCTGAAGACGATTTCCTGTCTTAAAAAACAGGACAGTAGGTTTTGGTGATTGCTTGCTACCATCCACAGAAAGGGAAACCCTTAGATTTCAGGAGGATGGGCGCTAGGTAACTTAAAAAGTTTATGACAATCTCAGTGCCTCTTTTTTATTTAGTTTTTAATGCAGTAATGAAGAAATTTGGATTTGGGTGGGGACATGTGCCCACGTATATTCTTAGGATTTAAAAGGCTATCCTGAAGTACTTTCTTTAAATTCACCTGTTGATGCTGAGATTTAAAGCAAACTTAAAAGAAAGACTTGTATGGAATAGGTGCTTGGTGACTTCTTGGGAAGAAGAAGCACGTTTGCTCCATGAAGTTCTTGATTACCCTTTGCTTCATAATTTGTGACCTCCTAGGCTTTCCCTCTGTCTGAAGACCTCCCCAGCTGTGGCCCAGTCCTGGCTCCTTGATAGGGAGACCTGCGACTCCTGCTTCAGTCATCGCCGTCTGTTGCTCTGGATCTCACACTGTCTGGGAAGTCTCCTTACGGTAGTGAGAATTCCTGTGGTGGCTTTGTTCTGTGACATGAGCATCCTGATGACCAGTGTTGCTTTTTTGGTTGCTGGTGCTTCATGTATTTACTTGGCTGACTTCTCAGTCTTTTTCTTGTCTTTACTTGCTATTTTTTTCCCCATGAAAAATTTTTTTGAGTAAAAGCTTTCTGCTTGAAAACTGGTCAACCCCTGTGTTATCAGTGAGTTAACTGATGTCAGGGCAGGCTTGTGCAAGCTCTCACGGTGGACGTGTGGCAGAGTTGTAACTTAAGGCTTTTGGATGCCCCCTTCTCACCTTCTCTTCTTTCTGCCATATCACCTTTTCTCTTTTCCTCAACATTTACTTCATTTTTCCTTTGAGAAATCCTTCATGGCTTATCTTTAAGGCATACTTTATGTAATCTCCTAAATTAATTTAGACCTGCTTTTCCAGGAAAAAAATTTCTTCCTTCACATGTGGCTGTAGAATGTCTGATACAGACCTTTAGTGTTTTGAAACCTTTATAGTGTCACTTAACTCCATTAAAAATTTTTTTCTAGTAAGTCTGCGTTGACGGTAGCTTATTTATGGCCCCCAAACAGCACTCTGAGGCTTCCATCTGAAGTGTGACTTTTCTTTGCTCAACTCTCATCCTTGTGGTTTCCTCTTTGCATCGTCGTGGGTATTCAGATTGCATAGTGGCTGTGTTTTTTCTGTCTGAAGAATTAGAGCTATGCTACTGTGACTCTCGACTTCCTGACTTCCAGGTCATTTATGAATAAAGTGCTGAACAGTTGGGTTTTTAAAGGGCTCTCTGAATATGCTCCTGGTACCATCGTGGTTTTTATTTATTCAGTTATTTAACATTAACCTTTTCTGTCTTTGAACTGTCTTAATTACTTTAGTTGTAATAGCCTTGATTTCTGCAGTTTATGCCATCTTGTTTAATTTTGCCATCTTGTACAAAACAGGCTTTGTTTTATTTTTTAATTTAAATTGTTTTTTTTGTCTCCATTTCTGAAAGGCTGAATTTGTTTTAAATACCAGCTAAGGAGACGACATTCTTCCTGTGTAGAAGGTCTCCTTTTTCTGCCCTGTTTTGTTCACTGGGAGAGTGCTGGGATCTAGTTGGTATGGAGTTTGCTTAGCCTAGGGAGTGTGCATGCTTCTCTCCTGTTCCATTGCCATCTCATTCAGCAGCTTTGGGAGATTCTCTCAGCTGCTGTATGCTTTTTCTCCACACTCTGTATTCCACCCCACCTCTGTCAGTAAAGTAGAGAAATAGCTTCTCTCACGGAACCCTGTGGAGTGTTTCGAGGACTTACTGAGGACTTACTGCTCAATATTTAGAAACTTGGTATGGATGGGTTTCTGCGGCAACACAGCAAAGCAGATTTCATTTAAACCTTTCTGTCCTCAAGTAGTTTCCAGGACCACCCTCTGCTAAATAAATATGTATTGTGTCAGCAGAGCTCACCTCTATTATGAATACATATTCACCTCCTAAATGCTCCTGTGAGGCTGCCGGGCATTTTCCCGAGGGGAGACGGTCGTAGCCAGGAAGCTGTGGGAGCGTCTCTGCTTTGGTGGTAGTTCTGTTAAAATCTTTCTAAGTGTTTAAAATGAATAGATATAATGGGAAAAATAACATTTTCTCTTTCTCTCTATTCCTCTGGGATGTGCCGTGGCATCACAG
Seq C2 exon
GCCTGTTATGGAATCCTCAAGGTACCAGAGGGCAGCTGGCTGTGCCGGACATGTGCCCTGGGGGTTCAGCCAAAATGTCTGCTGTGTCCGAAGAAGGGTGGAGCTATGAAGCCCACCCGTAGCGGAACCAAGTGGGTCCACGTTAGCTGTGCTCTGTGGATCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077684:ENST00000413543:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(12.4=26.8),PF0013017=C1_1=PU(75.9=62.0),PF138311=PHD_2=PU(42.9=21.1)
A:
NA
C2:
PF0013017=C1_1=PD(20.7=21.4),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development