HsaINT0123946 @ hg38
Intron Retention
Gene
ENSG00000119403 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr9:120861918-120862749:-
Coord C1 exon
chr9:120862588-120862749
Coord A exon
chr9:120862006-120862587
Coord C2 exon
chr9:120861918-120862005
Length
582 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
TCCCTCTTCTGTCTCCACAGTTT
3' ss Score
11.45
Exon sequences
Seq C1 exon
GTTCCTCTGCGGCAAGGAGATCAAGAAGAAGAAGTGCATCTTCCGCCTGCGCATCCGCGTCCCACCCAACCCGCCAGGGAAGCTGCTGCCTGACAAAGGACTGCTGCCAAATGAGAACAGCGCCTCCTCTGAGCTGCGTAAGAGAGGAAAGAGCAAGCCTGG
Seq A exon
GTCAGTGCTCGGGGACCCAGGGGCCAGGGCTGCCGCCAAACTCGGTTTCTCTGCTTCCAAGCAAGCAAGGAGGACCTGCACCCAGCCAGTCCCAGCTGTAGGACCCTGAGAGGGCTAGATAGTGGCTGAGCGGGATCCCAGATCCCAGATCCCCAACTCCTTTCACCACCACAGCCCCCTTATTACCTCGCAAGGAGGAAAAGCCAGATCTGAGGACCCAGCCTTGCTGGATTAGGACTTGGGCAAGGAGGTGAAGGGGAAGGCAGGGTGTGTGAGGGGTCCCTCTCTCTCCTGGCTCAGCTGAGCCCCCTCATCCTGGCACTGGGGGGCAGGGCATCTGGATGCATGTGCCTGGGGAGGCACCTTTTCTTTTTCTGCCCACTATACCTTCTCCACACCTTCCCACCCCTACTGCTCCTGAGGACTCTCCCTCCTCCCCAGGCCTCCCTGTGAAGGTGCAGCTGTGTTCAGAGCCTGTCTCCCCAACTGCTGTGACCCCCGCCCCTGCGGCGCCTCCCTCTGGGCCACCCTAGGGCCCTCAGGCTCTGACGGGGCCACCTTCTCCCTCTTCTGTCTCCACAG
Seq C2 exon
TTTGTTGCCTCACGAATTCCAGCAGCAGAAAAGGCGAGTTTATAGAAGAAAAAGATCAAAGTTTTTGCTGGAAGATGCTATTCCCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119403:ENST00000373896:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.418 A=NA C2=0.348
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCGGCAAGGAGATCAAG
R:
ACTGGGAATAGCATCTTCCAGC
Band lengths:
246-828
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development