GgaINT1021400 @ galGal4
Intron Retention
Gene
ENSGALG00000001595 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr17:8289449-8289778:-
Coord C1 exon
chr17:8289614-8289778
Coord A exon
chr17:8289537-8289613
Coord C2 exon
chr17:8289449-8289536
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCGCACATCTCGCCTTGCAGCCT
3' ss Score
7.12
Exon sequences
Seq C1 exon
GTTTCTGTGCGGAAAGGAGATCAAGAAGAAGAAATGCATCTTCCGCCTGCGGATCCGCGTCCCGCCAAACCCCCCCAGCAAAGTGCTGCCAGAGAAGGCCCCGGGCGAGGGCAGCTCCTGCGAGCTGAAGAGGAGAGGGAAGAGCAGATACGTGCACAAGGACAG
Seq A exon
GTGAGTGCTGCACAGCCACAAGGACAGGTGGGCGCGCAGCCCCAGCCCCGTGTCTCGCCGCACATCTCGCCTTGCAG
Seq C2 exon
CCTGCTCCCGGGGCAGCTCCAGCAGCAGAAGCGGCGTGCGGTGCGGTGGAAGAGGGCCAAGTTCCTGCTGGAGGACGCCATCCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595:ENSGALT00000002421:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATGCATCTTCCGCCTGC
R:
CCGCTTCTGCTGCTGGAG
Band lengths:
170-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]