HsaINT0124382 @ hg38
Intron Retention
Gene
ENSG00000144362 | PHOSPHO2
Description
phosphatase, orphan 2 [Source:HGNC Symbol;Acc:HGNC:28316]
Coordinates
chr2:169694465-169695247:+
Coord C1 exon
chr2:169694465-169694622
Coord A exon
chr2:169694623-169695214
Coord C2 exon
chr2:169695215-169695247
Length
592 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
GTCGTGCTATTTTTCTTTAGGTT
3' ss Score
10.44
Exon sequences
Seq C1 exon
TGCTGCAGTTGGCGGTCGGGCTAGAGAAGAGAGGCGCCTGCGCTTGCGAGCTGGGCTTGTGAGTGGGGCTGCCGAGAGGGCAGGCGTGGGGCGAGGCCAAAGGACTGAACCCGCAGGAGCGTCACGGGCGCCGGGGCGGCTGCCGACGGCGGGACTGG
Seq A exon
GTCAGTGAGAAGCCCGTGGGCCCCCGCCCTGCCTGCTACTCCCATCCCCACCTGCGCGCTCCCCATGGGGGACGACCCCCGATTGGGTCCGATGCCTACCCTCGGGGTGGAGCCGGCAGGTGTGTGAGCGCGCGAGGCCTAGGCGTGGTGTGTGCGTCCGCAGATCTCCTCGCGGGTGGAGTGTGAGGAGCAAAGCCCTCCCTTAACTATAAAAACCCGCGGATTCGCTGACATAAACGCTGTTTTTTTAATCCTTTGGTTTCTGAGGCATGGTCAGGACTAGATGGGGCCAAGTTTTTTAAAAATAGGAATGTTAAAACGTAATGATATGCTTAGAATATTTACGTTAGGACCTTTGAGATATTTTAAATTTCTTGGTAAATACATGACCACAGAAATCTGTTAGGAGTAGCTGCGCGTTTGGTTTCAAAAGATGCTTTTCTAACACATTGATGTACAGATAACTTCATTACTAACAAGTTGGCTCTGACGTGTACACATAATGCACCAAATTGGAGTCTCTCAAAATGAAAGAACAAAAAGATTTTTAATAACGAATGTTCTAACACATAGTCGTGCTATTTTTCTTTAG
Seq C2 exon
GTTTTCTATCAGATGTTCCACGTAATAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144362:ENST00000359744:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCGGTCGGGCTAGAG
R:
CAGCATTATTACGTGGAACATCTGA
Band lengths:
183-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development