MmuINT0119177 @ mm9
Intron Retention
Gene
ENSMUSG00000027088 | Phospho2
Description
phosphatase, orphan 2 [Source:MGI Symbol;Acc:MGI:1920623]
Coordinates
chr2:69627794-69628378:+
Coord C1 exon
chr2:69627794-69628013
Coord A exon
chr2:69628014-69628342
Coord C2 exon
chr2:69628343-69628378
Length
329 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTTT
5' ss Score
2.06
3' ss Seq
GTTGTGCTATCTCTCCTCAGGTT
3' ss Score
10.89
Exon sequences
Seq C1 exon
GCTGATGCTGGCGGCCCGCTGCGACCCAGGCCTGGGTCAGTGAGGAGCCCTCGGTCCCGCTCGGCCGCTGCCGCTTTTCTCACTCGCTGCGCTAGTTTGGAACCGGCCGGTGTGCGAGTCGAGGCCCAGGCTGGGTGCGAGCTTCTACTCTGCGCCCCGCTGGCTGAGGTGAAGGACAGCCCTTTGACCACCGAGCCACAAGGATTAAAGGACAGAAAAG
Seq A exon
GTGTTTTTAAATGATTTGATTTATGAGGCATAGTCAGGACTATATGAGACCCTGTCAGTTGTTACGTAGGACTATTAAAACTTGAATGTTGTCCCCAGAACATTCGCGTTGATACCTTTAACATACATTAAACTGCTTGGTAAATAACTTGTAATTAGTGTACTTCGGGAACCAGTCAGTCTCTAATGACACAAAAAGTGGACTGGCACTTGATCTCAGCAGAGGCTCTCCTGACATATCGCTGTACAGCTGATTTCATTACTAAATTAAAGGAAGTGCGACTTTCAATAATGAACGTTCTAATGCATAGTTGTGCTATCTCTCCTCAG
Seq C2 exon
GTTTTCTATCAGAGATGTTCCACTGTAATAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027088-Phospho2:NM_028521:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCTGGGTCAGTGAGG
R:
CAGCATTATTACAGTGGAACATCTCT
Band lengths:
230-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: