HsaINT0124462 @ hg19
Intron Retention
Gene
ENSG00000175287 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:23396]
Coordinates
chr9:131696290-131698782:+
Coord C1 exon
chr9:131696290-131696337
Coord A exon
chr9:131696338-131698726
Coord C2 exon
chr9:131698727-131698782
Length
2389 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
AGCTTCCTTCTGTCCCATAGCTC
3' ss Score
7.79
Exon sequences
Seq C1 exon
GAAATTTCCTGGTCCCTCCGGAGAAATCCATCAACAAAATTGGCCACG
Seq A exon
GTGAGCAGGGGCTTGGGGGTACAGGAAAGAAGATCGGGGAACAGGCTGGGAGTGGTGGCTTACACTTGTAATCCTAACTAACACTTTGAGAAGTCAAGGTGGGCAGATCACTTGAAGTCAGGAGTTCAAGACCAGTCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATAGAAAAAATTAGGTGAGTGTAGTGGTGCACACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCGGATGTTGCAGTGAGCTGAGATGTGCCATTGCACTCCAGCCTGCCTGGGTGACAGAGACAGAGTGAAACCCTGTTAAAAAAAAAAAAAAAAGAAAAGGAAAAAGCATGGGGAAACTGGGGAAACTGAAGCCTGAAGAGTTTAGGAGCTTTAATGAAAGCCCATAGTGGCTGGGCGTGGTCGTTCACGTCTGTAATCCCAGGACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTGACCAATGTGGAGAAACCCTGTCTCTACTAAAAATACAAAATTAGCTGAATATGGTTGCGCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAAGCGGGAGAATAGCTTGAACCCGAGAGGCTGAGGCTGCAGTGAGCCGATATCATGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAAAAGCAAACAAGAAAGAAAGCCCATAGTAAATTAGTGGTCGGGTAAATGGCATTTGTGGCTTCAGGCTCCCCTCTGGTCTTGGGCCCCTCTGCTAATCATGACACTGCTGCCACAGCACTGGGGATAGGGGGTCCACCTGATCCCCCCTAACAGGTGGGCATGTGCAGGCTCTCTACTGCCTGGCCTGGGGGAGCTCCTGGGTCCAGTGCTCCCTAGAGCCACCCTAAGGGGCACCTGACCTGCTGACAGGGTCCCTATTCTGACACCCCAAAGTCAAGTAAGAAAACCCTCACTTTTTTTCTTTAGGATCATACATTATAATTTGTTTTATAGGCTATTTATTTTTTTAAATAAAATTGAGAGGAGGTCTCGTTATGTTGCCTAGGCTGATCTTCAACTACCGGGCTCAAGTGATCCTCCTGCCTTGGCCTCTCAAAATGCTGGGATTATAGGCATAAGCCACTGCACTTGGCCTAGAATGCTTATTGTTAAGCCTGAAGTTATATCATGGTAAGCTTGTAGACAAGTTGTGGTAAAATACACGTAAGATTTACCATATCATTGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCTGTCTCTACTAAAAACACAAAAAATTAGCCGGACCTTGTTGTGGGCGCCTGTAGTCCCAGCTACTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAAACTCTGTCTCAAAAAAAAAAAAAAAAAGAAAAGATTTACCATATCATCATAACCCTTTTAAAGTACGTAGCTTGGCCGGGCGCGGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGTGAAAAACCATTTCTACTAAAAATACAATAATTAGCTGGGCGTGGTGGCACATGCCTGTAGTCCCAGCTGCTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACTAGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAACTAAATAAATAAATAAAAATAAAAAGTACATAGCTCAGTGGTATTAAATGCATTCAATCTTATGTTTATGACAATGAGGGACTATCCCATGCCAGGCCCTGGGCTGTCCCTGCACATTCATTAGCCCATCGAGTCCCACACCAGTCCTGCCTCCCAGGTTCTTCTAATCCTCATTTGACAGAAGAGGAAACTGAGGCTTACAGGAGAGAAATGGTTACCCGAGGCCACACAGAGCAAATGGTGGTACCGAGATTGCTCCGCATGATTGGTGCCTTGGAGCCCTTAGTCGTCTGTGAGGGGTGGGGAGTCGGGGCTGGACTGAGCTTCCCAGAAGGTCAAGAATAAGGGCATGGGTGGCATAGGGCCTGGGGTGGGGGCAAGGCTCCTGTGGAGCCCATTACTCAGTTGTAAACAAGCAGAAGGGTTAATGCCTACAAAGTAAGTGAGAATGTCAAAGTAAGCCTGAGTGTGGGTGCCCAGAGCTGGGTGTGGAGGGACACGTGGGCCTGAGATGGGGCCGACAGCTTCCTTCTGTCCCATAG
Seq C2 exon
CTCTGCACGCCCACGACCCCGTCTTCAAGAGCATCACACACTCCTTCAAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175287-PHYHD1:NM_174933:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(11.3=100)
A:
NA
C2:
PF057218=PhyH=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)