MmuINT0119255 @ mm9
Intron Retention
Gene
ENSMUSG00000079484 | Phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:MGI Symbol;Acc:MGI:3612860]
Coordinates
chr2:30130196-30132578:+
Coord C1 exon
chr2:30130196-30130243
Coord A exon
chr2:30130244-30132522
Coord C2 exon
chr2:30132523-30132578
Length
2279 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
AACCCATCTCTGGTCCATAGCTC
3' ss Score
6.46
Exon sequences
Seq C1 exon
GAAATTTCTTGGTCCCTCCTGAGAAATCTATCAACAAAATTGGCCATG
Seq A exon
GTAAGCAGGGGCCTGGGAGTGCAGAAAAGCAAGCAGAGTAGCCGAGATCTGAAGAGTTTAGGAGACTTAGGACCAAATGCTACCATAAGATGGCAGTTAGGTGGGTGGTAGTGGTTCTCAGGACACAAAGGCAGACAGATCTCTGAGTTCAAGGCCAGCCTGGTCTATAGAGAGAGTTCCAGGACAACTAGGGCCACATAGAGAAACCCTGTGTCAACAAAACAAAACAAAATAAAAAGATGGTTTTGACCACATGGCTCTGGCCACAGGCTCTCCTCTGCCTCAGTCTTCTGCGTCCCTTGATGTTGATCACTGGTGAGCCCCAGCTGAGAAATGGGTCCACTTGTGTGGCTCCCAAGATGGGCAGTGCAGGCTCTTCTACTTTCTACTGCCTGCTCTGGGAATGATCCCTAGCCACTGGGGTTCTGGCTCCAGGTACTTCCTAGAGTTTCTTGCTCTCTCTTTTTTAAAGGATGTATGTATTTATTTTATGTATATGAGTACACTGTAGCTATAGAGATGGTTGTGAGCCATCATGTGGTTGCTAGGAATTGAACTCAGGACCTCTGCTTGCTCTGGTCCAGCTTGCTCTGGCCCAAAGATTGATTGATTGATTGATTGATTGATTGATTTATATGTAAGTACACTGTAGCTGACTTCAGACACCCCAGAAGAGGGTGTCAGATCCCATTACAGATGGTTGTGAGCCACTATGTGGTTGCTGGGGTTTGAACTCAGGACCTTTAGAAGAGTAGTCAGTGCTCTTAACCCCTGAGCCATCTCTCCAGCCCTCCTTAGACTCTTTTTGTTTGTTTGTTTGTTTTCGTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCACCACCTCGCCTGGCTTAGACTCTTTTTTAAATTAAACATCTATTTAGTCTTCCCCCCCTCCCTGCTCCCTGCGTGTGTGTTGAGAACTGGCTAGAGTGGGAGTGTGTCCGCATGAGTGTGCCGTGGAGTGGGAGTGTGTCCGCATGAGTGTGCCGTGGAGTGGGAGTGTGTCCGCATGAGTGTGCCGTGGAGTGGGAGTGTGTCCGCATGAGTGTGCCGTGGAGTGGGAGTGTGTCCCCATGAGTGTGCTGTGGAGTGGGAGTGTGTCCCCATGAGTGTCCTGTGGAGTGGGAGTGTGTCCGCATGAGTGTGCTGTGGAGGATGTGTGGAGGTCTGAGGACAACCTGGAGGGGACATTTCTTTCTCTGTGATTGTGAACTTGGGTTGTCAGGCTTGGCGGCAGGTACATTTACCCACTGAGTCATCTCACTGGCTCTCTGTTTTGGTTTGCCTTTCTGTTTTTTCTTTGTCTAATCCAGGCTAGCCTGGAACTCACAAACCTACTGCTTCAGCCTCCCTAGTGTGGGGACTATTAGATATTCACCATAATACCTAGTTCATCATTAGCATTTCAAAATATATAATTCAGGGTCATTAAATATGTTCAACTTTTTGTTTTGTAATAGCAGTTGCAGATGCTTATGATAAGGGATCATCTTGGTAGGATCTGGGCTGCTGTCGCACACTCCTTAGCCCACTGTGCCCTAGAGCATCTCTGGGGACACAGCTGTTCTTCTCACCCCACTTTATAGAGAGGAGACTGAGGCTTGCAGGGAGAACTGTCATCTGGGTTCTCACAGCCTCAGTGACAGTCCTGAGATTGCTATAAGAGACAGTCCTTCTGACTCTATGAGGTATGGGGAGTCAGGGCTGGAATGAGTTTTCCAGGTGCCCAGATGGTCCCGAATAAGGACACAGGCAGACCAGAGATATAGCTCAGTTGGTGGAGTGTTTGTATAGTACACATAAAGGCCAGGCTTTAATCCCTAGCATAGTATGAACTATGGTGGACTGTGGCTTCAATGGCAGCACTCAGGGGTTGGAGGCAGGAGGACAGGAAGTTCAAGGTCATCTTCTAGTACAGAGTAAGTTCAAGCTATCCTGGGCAACATGAGACCCTGTTGAAAAAGCATAATAAAAGAAGAAAGGAATAAGGCCCTGGACAGAGTAAGGTCAAGGTGTCTGTGTCCCCTTTACTTAGCTATAAACAAGCATAAAGTTTCAAATATGTGAGAATTCCAAATTGAGGCCTGACTTTAGTGTCCAGGGTGTGGGAGGGATACACAGGTGCTGAGGCTAGCTCATGAACCCATCTCTGGTCCATAG
Seq C2 exon
CTCTGCATGCCCATGACCCTGTCTTCAGGAGCATCACACATTCTCCCAAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079484-Phyhd1:NM_172267:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(11.5=100)
A:
NA
C2:
PF057218=PhyH=PU(40.0=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: