HsaINT0124936 @ hg38
Intron Retention
Gene
ENSG00000011405 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr11:17091334-17091656:-
Coord C1 exon
chr11:17091547-17091656
Coord A exon
chr11:17091460-17091546
Coord C2 exon
chr11:17091334-17091459
Length
87 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
GGGACTGCTTTTCTTTTTAGGTT
3' ss Score
9.78
Exon sequences
Seq C1 exon
ATGCAGGTTCCTTCAGTCCTACTCCAGGCCAAATAGGAGGAGCTGTGAAATTATCCATCTCTTACCGAAATGGTACTCTTTTCATCATGGTGATGCATATCAAAGATCTT
Seq A exon
GTGAGTGATTACAAAGAATGATGGTTGTAGAGGAAACCCTTACCTTGGTAGGAAGCATTACTATTAAGGGACTGCTTTTCTTTTTAG
Seq C2 exon
GTTACTGAAGATGGAGCTGACCCAAATCCATATGTCAAAACATACCTACTTCCAGATAACCACAAAACATCCAAACGTAAAACCAAAATTTCACGAAAAACGAGGAATCCGACATTCAATGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011405:ENST00000265970:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.190
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(11.2=27.0)
A:
NA
C2:
PF0016825=C2=FE(46.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGTCCTACTCCAGGCCA
R:
ACGTTTGGATGTTTTGTGGTT
Band lengths:
178-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development