HsaINT0125005 @ hg19
Intron Retention
Gene
ENSG00000139144 | PIK3C2G
Description
phosphoinositide-3-kinase, class 2, gamma polypeptide [Source:HGNC Symbol;Acc:8973]
Coordinates
chr12:18473896-18478032:+
Coord C1 exon
chr12:18473896-18473966
Coord A exon
chr12:18473967-18477968
Coord C2 exon
chr12:18477969-18478032
Length
4002 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTCTATTTTTTATTTTCCAGACA
3' ss Score
9.67
Exon sequences
Seq C1 exon
CATGAAGAGGACCACAGTCAGTTTTATCTGAATCAACTTCTAGAATTTATGCATATTTGGAAAGTATCCAG
Seq A exon
GTAAGATATTTTATATTTGTTCCAAGACTACTTTCTGATTGAGTTCTCAAATGTCAAATCTCAGTATTTTTCAGTTGATTGTAAAAACTGTCCATTCACTGGGACTGTGGAAGCTATTGTACTTTTAACAGGCAAATTCTGTTAATAATTATCCATTCTTCAAAGTTATTCAGACATATTTGAAGAGCTGCTAACACTTTCCAGAACATTCTAACATTCATTTAAAAAAATCTCTGCTGCTGGTTATTACATTTTCAAGGACTTGTTTTCCCGATTCATTTTGTGATTTTGGGTTTGCATATGTCACTTAAGCTCTTTGTAAAACAATTTTAATACTTCGAAGGTAACCATCTCCTACTTGTTTCTGAAACTCCCTGAAAATAAATGGTATATCATAAATACAGGAGTGTAAATTCAAATTGGAAAACTTGATTGACAACAAATGAACATATCCTACTTCATTCTTATATCTAAATGTATGCATGTATTATTTGGAAGAACAGACTTATTGCGTAGCTAAACTGGGAGTTTGGGTGTATCTGCAGTTAAGGTTGTTGTGAGCTGAACCAGTAGAAAATGTAGTGTGGGAGGTACAGGTCATAAATCTCTAAAGTAAAGGCTGATATAACATATCAGCTAAATTTACGATAGCAAAGACATGGGATCAACCCATATGCCCATCAGTGATTGACTGGATAAAGAAATGGCACATATACACCATGCAGCCATATAAAGGAATGAGATCATGTCTCTTGCGGGACAGAGATGGAGCTAGAAGCCATTATCCTCAACAAACTAACATAGAAACAGAAAACAAAATACCACACATTCTCACTTATAAGTGGGAGCTGAACAATGAGAACACATGGACACAGGGAGGGGAACAACACACACTGGGGCCCATCAGAGTTGGGGAGGGAGAGCATCAGGATAAATAGCTAATGCATGCAGGGCTCAATACCTAGGTGATGGGTTGATAGGTGCAGCAAACCACCATTGCGCACGTTTACCTATGTAACAAACCTGCACATCCTGCACACGTTTCCCAGAACTTAAAATAAAATAAAATTGGCCAAGTGCGGTGGCTCACGCTTGTAATCCCAGCACTTTAGGAGGCCTAGGCGGGCGGATCACAAGGTCAGGAGTTCAAGACCAGCCTGGCCAACACAGTGAAACCCATCTCTATTAAAAATACAAAAATTAGCCGGGCATGGTGGCATGTGCCTGTAGTCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGATGTGGAGGTTGCAGTAAGCTGAGATCACGCCACTGTACTCCAGCTTGGGTAACAGAGTGAGACCTCATCTCAAAAAAAAAAATAATAATTAATTTAAAAATAATAATAAAATAAAATTAAGTTTAAAAATAAATAAAAATGTGAGCTAAAATTGTTTTTAGTGACTATGTTGGGTAATGATTTTGTGAAGTTATTATATATTTACATATATTATCTCATCTAATTCTTTCTAAAACTCTGTGATAGTATATATTATCCTGTTTCAAAACTAAAGAAACTGAAGTTCTGAGAGGCTAAATAATTCACCTAAGGCCATTCTAGTCATCAGTGGCAGGACTAAAATCAGGTCTGCCTGAAATTTACAAAGGACATTTTCTTTCATTAACTATTGTGTTTTTCCATTGCCCTTCTCTGCCACCCTTCCCCCTAAAAACATCCATCTTCACTCCATAAAATCATAGAATGGCTAGGACTAGAAAGGATTTTAGACATAATCTAATACAAATTTTCGTTTTATAGGTAATTACATGATTCCACTATAGATTTCTGTTGTATAACATACAAACAAGGTCTGTAGTTTCCTTTCTCCAAAATAAATCTACCCAGGGGTGGGGGGAACAGAGAGAAAGGGAGAGAAACACACATACACCTCAAATATGGGAAGTTTTTCAAAAAGCAGGATATCCTTGGGACACAAAGGACTTTGCTGGGTTGGTGGAGGGTTGTTGCACCTTTTAAGTCACTGCTACCTGGGGCACAGAGAGGCAAGCCAAGGCTGTGAGAAGAGAGTGAGAGAAGGAGGCTTTCATTCTGTTCTTGTCTTACCCCTGCCATTGCCTGCCCCCTAGCAGATATTTGATGGCCAGTGTGCAGTTGCAGGGGTCCAGAGGGTTAATTCAGGGCAAAGCAAAAGTTCTGCTGTAGCAAGGGTAGAGGAAACATGTCTGGGACAGCCTAGCTTCAGACTTTACTCCTCCATCCCTCCCTCCAATCCCAGGGCAGTGGATTACAGTCTGGGGTGATGCCATCTCCCAGTGCTATTTTGTCTGTGGTAAGGAAACTAAAAACAGAAGTTCAAACACTTGGCAACCATCACACAAATATTTAATCCCATAGCCATGACTAAAACCAAGTATCTAACTCTGAATCAGTGCTTATTCCACTTCCATTATGTTCTGACCCTTCACCCCTTATTTTTCTCAAAGGGTATCTAACACAGAGACATTCTCAGCTTCATAAAGGCCACTGTAGAACTTTACTTTTGGGGATACAATGCTTCCCTGCCTGCCCTCCTCAGAACACCGTATTGGATCACAGAGACATTCTCAGCCTCATAAAGGCCACTGTAGAACTTTACTTTTGGGGATACAATGCTTCCCTGCCTGCCCTCCTCAGAACACCGTATTGGATCATCAAAAAAATCAAGCACTGGATGGCAAGGGCTTTGATTTCAGCCCTTCTCTTTTATGACTCAACTTCCTCTTAGAAGTTGAGCAAATCACTCACCTTCACTACTTCCCAGTGGTTTTTTCTATAAAATAGATACAATATCCAAAAACAAAGTGCTGAAGTGGGTGCATTCTTGGTGGTACTAATAGTTTCAGGTTTTATATAAAGACACTGCCATTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGACGCCGAGGTGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAACATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCCGGATGCTGAGGCAGGAGAATGACGTGAACCCCGGGGGGCGGAGCCTGCAGTGAGCGGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGCGACACTCCGTCTCAAAAAAAAAAAACCACTGCCATTGCCCAAATCTTTAGTTATTATTTTCCTCCCCTTTCACTGACTTTTACATATTCTATGCATTTTGTCTTTGAACTGACAGAGGGACTCCAACTAAAGTGATAATGTAGAAAAATGAGAATGCAGCTACTGTAAAAATAATGGTGTTTGTTTTAATGTTGCGTTTCTGAGTTGTGTGACTTATGATTCAATTTAAGTCAGGAGTTTTCAAGACAAATAAGAAGGTAAAGTCAATAATGTTTGGGAAAATAATTTTTGAACAGCGAAGCTCAGAAGAATTTCTGCTCAAATTGCATGTCTTCTCCCTAAGCATAGATAAAGCTGGAGCAGTAAGAGAAGCTTAGGAAAGAAAAATGCAGAGGTTTGGTGTCAGAGACAACCCCATCTATTATAAATATAAGCCATTAATTCCAAATGCAATTCTCTACAAGATATGCCATACTTAATATTTCTTGATGTTAATATATGCCATTATCTGCTTATGAATCCCTTTGCAACTTACGGTTTGAATTAAGAGTAGTTTTATATAATGATCAGCCTTTGAGAGGTTTGGTTAATTTATCATGAATTCTTTGGAGTTCTAAGACTTTCAGATATGTTTGTAGTCTATCAAGTTATACAAACTTTATAAGGCACCCTTCTGAGATGTTTTTAAAATTATGTCAACAATAATCCTTTTTATACCATGCCTACGATAGTATCATGGGCAAAACAATTTGTGATAAATGTTTGTGCTAAAGGTAATATAAGTTTTCCCACCCAATTTTAAACAAAGTTTCTATTTTTTATTTTCCAG
Seq C2 exon
ACAATGTCTCTTAACACTCATCAGAAAATATGACTTCCACCTGAAATACCTATTGAAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139144-PIK3C2G:NM_004570:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027315=Serum_albumin=FE(16.5=100)
A:
NA
C2:
PF0027315=Serum_albumin=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)