BtaINT0111726 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020715 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr5:92218447-92222093:-
Coord C1 exon
chr5:92222023-92222093
Coord A exon
chr5:92218511-92222022
Coord C2 exon
chr5:92218447-92218510
Length
3512 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AAGCTCTTTTTTCTTTCCAGACA
3' ss Score
7.7
Exon sequences
Seq C1 exon
CATGAAGATGACCACAGTCAGTTTTATCTGAACCAACTTCTAGAATTTATGCATATCTGGAAAGTATCCAG
Seq A exon
GTAAGACATTTCATTTCTGTTCTAAGACTACTTTCTGACTGATTTCTCAAGTGCCAAATCACAATATTTTTCAGTTGATTGTATAAACTATCCTTTCACTAATACTGTGGAAGCTATTGTACTTTTAATAGATATCTCCCTTTGGCAAATTCTGTTAATAATTATCTATTCTTCACAGCTATTCAGATACATTTGAAGAGCTGCTAACACCTTCCAGAACAATCTAACATTCATTTAAAAATCTCTCTGCTACCAGTTATTAGATTTTCGAGGATTTTTTTCCCTCATTCATTTGGTAAATTTGATTGTGCATGTGTCACTAAGCTCTTTGTATCACTGAATTTCCATACACTGAAAATCACTATCTCCTGCTTTAAATTCCTTTCTGGAACTCCTTGAAAATAATTGGTACATTATAAACAAAGGAGAGTGAATTCAAATTGGAAAACTCAAGTGACAGCAAATGAGCATATCCTAATTGAGTCTGATATCTCAACATATGCATGTATTATTTGAAAGAATAGACATATCAAAAAGCTAACCTGGGAGAAGGTATCAGTGCTACAGGGTGAGTTTATCAGGAATTAAAGTTGTTCTGAGCTAAATGAGCAAAAAATGGAGTGTGGGAGGTATGTGTCATAAATTCTCTAAAGCACAGCCTGATATAAAAGTGAGTTAAAATTGTTTTAGTGACTATTAATAATAGCTATCACTTCCTGGAGTTCTAGTACATTTTGCATACATTATCTCATCTAATTCTCCCTTTAACCTCATAACAATACATACTACCTTACTTCGGAATCAAGGAAACTGAACTTCTGGAAGGTTAAATAACTTATCTAGGGCCGATCACTCAGTTTGTTAGTAGAAAGAGTGAGACTAATGCTGTCTGCAATTTGCAAAGGCTACATTCTTTCATTAAAATATCATGTCTTTCTCTTTCCCCCCAGTATTCAGCCTCATACCATAAAATCATAGAATGGGTAAAACAAGGAGGACTTTTTATATCACTTAATCTAAATTATTATTGTATTACTAATTATATGCTTCAGATAGGTCCCCATCAAAATGGTGTATTAAATCAAAGGTTGTGTTTCAAAATAAATTTATAAGACAACAACTACCACATCAACAAATGCAGAGAGAAACACCAAATTGGACAAATTCTTCAAAAAGTCTGGATTCCTGGGAGTCAGATATTTGTTCTGAACTGTTTGGTGGAGGGCTGTGACTTGTAGGTGGATGCTACCTGGGGCACAGGGAAACAAAAGGAGCCTGTGACTCTTTGGAAAAGACCCTGTGCGAGGAAAGGTTGAAGGCAGGAGAAGAAGGGGATGATAGAGGATGAGATGTTTGGATGGCATCGCCCAATCAATGGACATGAGTTTGAGCAAGCGCCAGGAGTTGGTGATGACAACTGCATGCAGGAATGACATGCTGCAGTCCATGGGGTCACAAAGAGTCAGACACAACTGAGTGACTGAACTGACTGTGAGACCCATAGGATTTATTCACTAACTTTTCATTGTCAGTAATTTTTAATTGAAGTGTAGTTGACAGACAACATTTCTTCATTCCCTTTCTTCTTTTTGTTGTTCTTCTGACTGGGTGATTTCAAGAAATCTGTCTTTAAGTTTAAGGAGTCTTCTGCTTGGAAGTTTATCAAATTCTTCGGCTCAGTCTTGTATTCTTTAGCGCAAACATTTCTATCTGACTCTTGTGTTTTCTCTTTGCTGAATTTCTCATTTTGTTTCTTGCATTGTTATGCTAAATTCACTAAATTCTTTTTCTGTGTTCCCTTTTGGTTCTCTGAGCATCTTTAGAACAGTTATTTTGAGTGCTTTAATCAGACAATTCTTTTATCTCCATTTCTTTGGGGTCAGTTGCCGGAAGTCTACTGTATTCTTTGGGTGGTGTCATATTTCCCTGATTTTTTGTGATCTTCGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTGGGCTGCAGTGCATGGGATTGCTGAGTCAGACACGACTGAGCGACTTCACTTTTGCTTCTCACTTTTATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGAGGGAGCCTGGTGGGCTGCCATCTATGGGGTCGCACAGAGTTGGACACGACTGAAGCGACTTAGCAGCAGCAGCATAGCCTTATATCCCTGGGTGGGGAAGATCCCTCAGAAAAAGGAATGGCAACTCCCTTCAGTATTCTTGCCTGGAGAATCCCAAGGACAGAGGAGCCTGGAAGGCCACAGTCCATGGGGTCACAAAGAGTTGAACATGACTGAGCAACTAACACTTTCACTGCACACAGCCTTGCATAGCTGTCTGTACAGAGGAAGCAGCAGTCACCTCTTCTAGACTGTATGAGCTGGCTTCAGTATGGAAAGACCTTCACTCACAGGCAAGGGTGTGAAATGTGCTGTGACCCTGGGTGTAGTGGTGCAAGGCACCAAGCACAGAATTGTGAGACAACTCCAGGTCTGGAGGGGAGGAGAAACACAAAGTCTGCTCAGCTCAGGTCACAGGGTTCCACGGCATCCACAACCATGTGGTCCTTGGCAAGTGCTGTAGGAGGTCTGCAGTGCTGCAGAGGCTGTTGTGATCCTCAGCCGTGCCTCCAGATAGGGACCATGGCAGACAGCAGTTGCTGCTGGAGCTGGTCGTGTACATATACACACACACCCAGCTGTGAAGACCAGCTGCAGGTGCCTGTGTAGCGACAGGGTTGGCTGCAGACACTCAGAGTTGGGCGGGAGATTGAATAGGGCTACCTGCTACTATAAAATATATTGGTGTGTTTTTAACATTGTGAATTTGTGTTATACATTTCATTATTTGATTCAATTCAGGAGTTTTCAAGACAAATAGGAAGGGAAAGTCAATAACGTTTGGGAAAATAATTTTGAATAGTGAAGCCAGAAGAATCCCTGCTCAACTCACATCTATTCCACCTAAGAGATAAAGCTGAAGCAATAAGAGGAGCTTAGGGAAAAAGGCAAAAATAGCAGGAAAAACTCAGAGGTTTGGGATCAAATACAACACCACCTATGATAAATATGTCCTTAATTCTGAAAGCAATTCTCTGCAAATTTTTGCATATTTAATATTTCTTGATGTATCTGTCATTATCTCCTTATGAATCCCTTTGCAACTGACATTTTGAATTAAAAGTAGTTTCTTATAATGAACAGCATTTGAGAGGCTTGCTTAAGATGTCAAAAATTTCTTCGGAGTTTTAAGGTTTTTAAATATGCTTGTAGCCTATCAAGTTATACAGAGGTTTTAAGGAAGACATGCAAAATGATATTTAAAATTACATCAACAGAAATCCTTAAGCCACATTTGCTATAGAATCATGGGCAAAACAATACTTGTGATAAACTTGCTAAATTTAATGTTTTCCCACTCAATTTTAAACAAAGCTCTTTTTTCTTTCCAG
Seq C2 exon
ACAGTGTCTCTCAACAGTAATCCAAAAATATGACTCCCACCTGAAATACTTATTGAAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020715:ENSBTAT00000043102:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]