RnoINT0111323 @ rn6
Intron Retention
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:173802633-173806876:+
Coord C1 exon
chr4:173802633-173802703
Coord A exon
chr4:173802704-173806812
Coord C2 exon
chr4:173806813-173806876
Length
4109 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTTTGTTTTTATCTTTGTAGACA
3' ss Score
9.7
Exon sequences
Seq C1 exon
AGGGATGATGACCGCAGTCGGGTCCATCTGAACCAACTTCTAGAATTTACACATATTTGGAAAATATCCAG
Seq A exon
GTAAGCTGCTCTGTTTCTATCCCAAGACACTTTTCTCCCTGCATTCTCAAAGGCCGGATCACAGTGTCTTCTCAGTCCACTGTAAATACTGTCCCTTCTCCGGGACCCCTTCGGCTGTGGCACCTCACTACAAAGCTCCCCTTGGCGAACTCTGATAATAATCACCTGTTCTTCACAGCTTCTCGTCTGTAGTGAGGAACTGCCAACACCCTGCAGAATAATATGGCTTTCATTTTGAAATATCTCAGCTGCTGGTTATTGTGCTCCGAATTATTTCATTTTCTTATTCATTTTGTGTATCAGGGCATTCGTGTAACTCAACTCTTTGTAAAAGCCCAATTCCCCACACCTTGAAAAGTCACCATCTCCTGTTTAAAATTCCTTCTGGACCTCCCTGATATTATTGCTATGTCATACACGGAAGAGTGTGAATTCAAATTGGGCAACTCAAATGACAGGAAACGGGCACCTCGCAATTGACCCTCGCACCTGCATGTATGCCCATTGTTCTCCGAGTAGATGCATCAGTAAAATGAGCATTAGAAGGCATCAGGGCTGTGTGTTGGGTTTTCCTGGAATTAAATTGTTAGGAGAAAAAAAAAACAGGAAGAACCTGGGGTGTGGGAAGTGGAAGTCAGATGTGTTTGTGTTGGGGTGGAGGTGTCATAAGTCTCTAAAACGAAGCCTACTATAAAGCTAGTTAAATTTGTTTGTGGCATATTAATAACACTCATCACTCTATGAAGCCCTTGAATATTCTGCACGAATTTTCTCACCTAAATCTCTCCTCACCTCATGGCTGTGAAGACCCATCTTGTCTGCTTCAGACATGGAATCCAAGGCTTGGAGAGCTCAGAATAGAGACTCCAGGATCCTAAGTCACTGTTAGTGTGAATGCCGAACTCACTTGCAGTGGAACCACCAAAGGCCGCATCTTCACAATGAAGCAAGACTTCTCTACATTGACTTTGCCCAGAACCACTCTCATATCATCCAGGCTCATTCTGTATCATCGTATGTGGTTAGGACTGAAAAGGCCTCTCAACATCATCCAATCCAAGTTCTTTCTGCAACATAGTTACTAGAACCACATACAGGTTCCTGGACATATTAACTAAGGCTGCAGCTTAATTTTTACAAAATAAGCCTACCCAAAGGTCATGGAGAAATGAATACCAAAGAGTGAAACCAGAAGTAAGGTAGAGAGATAGAAAACCTACCACGTTTCTAGTAAGTTCCAAATGAGGAAATTCCTGGGTGAGGACGTGTTCTTTCCAACCTGACTGTCTGAGTATTGGGACTTGAGCCTAGTTCTTGGGCTTTGGGATGGAGAAGCAGATATGAGGAGACAATCACACAGGAGACATCTCTATTCTTGTCTCGCACGTGCCACCACTTGCCCCTTTCTGTCTGGTGGCCTTGGCCGTGCATAAGTGTCCACTGAATTAAGTGAGAGCAAAGCAAACGTCTTACTATATTAAATGGCTGAGGACATCCAACAGGGACAGCTTAGGCTCCTGCACCTTTATACTCTCCCCTGAGAGTAATGGACGACAGTCTGGGAAGGCAGGATAAGATGCTATACAACAATACCCTTCCTCCTTCATTATACATATTACTGTATCTTTTACTTGCCTGATGTAATTGTTTTGTCAGAGGCTTACTGCCTCTGTCCACACACTCAGACAGGGAGAGGGAAGGGTCAGGAAGACTGCAAGTGCAATGCCTTTCTGGACTACCTATCAAAATCCCTTCTCAACAAAACAGGGCCATCAAGCCCTTGATGGCTAGAGTAAGGACAGAGGCTTTTCTCTGGGTCTCTGCCTTCTAAGTTTTATCTATTTCTCACAAGTTAAGAAAAATTATTGACTATCAATATCTCTAATTAGTTTGCTTTTCTATTAGGTGCATATAATATTTACAAGCAAAGTGAAGGAGTAGGTGTGTTCTTGGGGGTCTTTTTAACATTAGGACCATATTTTGCATGAAAACACGCTTTACTTACCACTCCACTGGCTTGTAGAGAATTTATGTATTTTTGTCTTAAAATGACAGCGAAACTGAAAATGGGATAATGCATGAGAAGAAAGCTACTGGAAAATACATTAATGGGTTTTCCATGTAGGTTTTTTGTCTGTAACTCAGTATTAAATTCAGCTCGAGAGTTTTCAGAACACATATGAAGATGAAGATAACAATGTTTTAGAAAGTGGTCTGAGCAGCAAAGCTGGCAAAAATCTCGGCTCAAATCTCATGCATCCCAACCAAATACAGATAAACCTGGAACAATAAATAAACTTGGGAAAGAAAAATGCAGTGATCTGTTGTCTGAGAAAGCCCCATCCATCATAAATACCTGTCAAATGATTTTTTTAAGACAGGATACTTAGTATTTCTTAATGCTAACATTTATCATTATGTGCTTATGAATCACATTTGGGTTTTTAGAGCAAACTATTTCTCCTCTCTGGTCTTACGTCAGCAAAGAAGTTTCTAGACCCTAAAAAAGATGTGAACATTTTGCCCTGCTAACAAGCAGGAGTTCAGTTTTATAGTAGTTACCTTCTATGTATACTTATGTTCAACTTAACATTGACAAGGTCTCCCTGGAGATGGAGCCTCAAGGAAAACATATTGAGGGCTCAGAAACCATCAAGACTCCCCCACTATGATTCAGATACTAAGATAGATTATATGATTGTGGTCAACCAGCTCAAAACCGAGGCCTCATACCCATCCCCTGAGGCTCATGATGGTCTCAGAGACTTAAGGGTGCATGTTGATACTCATAAGACATTGCAGTGGTCAGGGATAAAGTGGTTCAGAAGATTAAGAAAGGATACAAAGACCCCCAACTCTCTAAGGCACACTAACTTTCAGGAGGCCATCTGGAAACTTTCCAAACACCTGCCCTTTGGACTTCCACGGAACCTTCATAATATCTACATGATCAATCGCGTCACTGGCTGTATTAGCTGTTTTTTTCTAGCTACTGTGATAAAATACCACAACACAAACAACTTGAGGAAAGAAAGGTTTCTTTTGCAGTGGCTCACAATTTGAGGATAAAAATCCATCATGGCAGAGGAGTCAAGGCAACATAAGTTTGAAGTAGCTGGATATATGCCTCTGTGTTTAGGAAGAAGAGAGAGGTGAATAGTAGTCTATGTCCCAAAGCCTGGAGAATGATGCCACCTATGTTCAGGGTGAATCTTCCCACTTCAATGAGCTTAATCAAGATAATCCTTCACAGGCAGGGCCAGAGGCTAACTTAATATAAATAATCCCTCATAGGCATACCCCAAGATGAGTGAGTGAGTCTCCTAGGTGACTCCAGATCTCGTCCTGTTGACAATTAACATTACCACACTGGTCAATGGTGGCAAATCTTCAACTCCCAGAAACTGAGGGTAGACCAGACACTAACCTTATTAGAAGTTTTCGGTGGCAGCTCCTACATGACAGAAAGTGCCTGCATCCTACACTTCAGTCCACAGTTCAAGGTTACAGTCGACCACTATGGAGAAGTTACAACTGCTGGAATTTGAGCAGCTGGCCACAGTGCATGCACAGTAGAGAAGAAGAGAAGGATGGAGATGTTCTAATGCTCAGCCCACCCTCCACATCTCACACAGTCCAGGATCCCTCTTTCCATGGAAGGGACTCAACCACAGTTGGAGATTCTATCTCAGCGAAACCCAAGTCAAGATAGCCCCTTACAGATACGCCCAGTAGCCTTTTCTCTAAAGTGACTCTATAGTCTGTCAACTTGACCATTAATACACTCACAGTATGTAAGCTATAATCTATGAACCTTGTAGGAATGGTGGGCTTGTGAAATGTTTGCCCGTTTAAATATGTCTTAAAGGATGAGGGATCAAGTATGATAGAAAGCGGGGAGCTGTTTCAAGAATTCCCTGAATTGATCCTAAAATTTTATGACAAATAAAATATTTTCAAGGTACAAATTTTAAGTCATATCAAGTGATCTGTTTATGTTCTGCCTAATAGAGAATCATGGCAAGATTGGAATTTGTGATAGATGTCTGTACTAAATGTGTGATATTTTCACCACAAATTTAACCAAATTTTTGTTTTTATCTTTGTAG
Seq C2 exon
ACAATGCCTCTCCACAGTAATGAAAAGCTACAACCTCCATGTCGAGCACCTGTTGAAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228:ENSRNOT00000041499:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]