HsaINT0125318 @ hg19
Intron Retention
Gene
ENSG00000186088 | PION
Description
pigeon homolog (Drosophila) [Source:HGNC Symbol;Acc:28042]
Coordinates
chr7:76958650-76959684:-
Coord C1 exon
chr7:76959556-76959684
Coord A exon
chr7:76958709-76959555
Coord C2 exon
chr7:76958650-76958708
Length
847 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
TGACGTGTTCTCACTCCTAGAAA
3' ss Score
9.07
Exon sequences
Seq C1 exon
GTGCTCAGCTTTAAGGGCTACTGGGAAAAACTGAACTCCAACCTAGAATATGTTAAGTACGCCAAGCCACACTTCCACTATAACAACAGTGTGGTCAGGAGAGAGTGGCACAACCTGATCTCTGAAGAG
Seq A exon
GTATGAGTGGGTCAGTGAGAACAAAGCCAGCAGCGAGGCATAGTGGACTGGATCCAGGTGATGCCTTTAAATCATAAGGCTGGCTTCCATGTGCAGCACTCTTCCCAATTGCCAGGGACTTGATCATTGTCATTACTGATCTCAATGGGCAGAGATGCTTCTATGATCTCTGTTCTCCTAGGGAGGAAACTGAAAAGCAGAAAGTTTAAGGGGACACACAGCACATTCATAGTAGAAGTATGATTAATATCCATGTCTCAGATGTGTTCTCAGGTTACTTATGTAGTTAAAAATTGATATTAAAAAATCTAGGTGTTCCCAACTTAGTGGTCATTAGGGGTTGGGGTAGTTGGAGGGAGAATAGTGGACGTGACTCACTGTCCAGGGGTGACCCAGGGAAATCTTTGGGGGTGATCGAAGACTTCTATGTGTTGATTGTGGTGGTACATTGTGGGACATGAATCTAAACATGATAAAATGACATAGAATGACACACACACATTGTGCCAATGTCAATTTTTGATTTTGATATTGTGCTCTAGTTAGGTAAGATATAAGCACTGAGGAGACTGGGTGGAGGGTACATTGCATCTCTCTCTAGTATCGCTGCATGTAGATTAGTGTTGTTGTGTGTAGTATATAGTTGACTCGCAGTTTCCTGTGAATCTGTAATTGTTTCAGAATAAAATATTTCTTAAAACTTTAAAAAAAATCTAGGTGTTCTGATTACCTGGAAAGTATATTTCTTCTCTCTGATGCTCTTAACTGTATTGCATTATATCCTTGACGTGAAAAGTCACCGATAAAACCTTTACCTTCCACATTTCTGACGTGTTCTCACTCCTAG
Seq C2 exon
AAAACAGGAAAAAGAAGGTCTGCGGCATACGTGAGGAATATTCTTGATAATGCAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088-PION:NM_017439:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF042867=DUF445=PU(23.5=74.4)
A:
NA
C2:
PF042867=DUF445=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGCTTTAAGGGCTACTGG
R:
CTGCATTATCAAGAATATTCCTCACG
Band lengths:
182-1029
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)