HsaINT0125325 @ hg19
Intron Retention
Gene
ENSG00000186088 | PION
Description
pigeon homolog (Drosophila) [Source:HGNC Symbol;Acc:28042]
Coordinates
chr7:76942805-76943806:-
Coord C1 exon
chr7:76943687-76943806
Coord A exon
chr7:76942867-76943686
Coord C2 exon
chr7:76942805-76942866
Length
820 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AATCTCTAACTTTCTTGTAGATC
3' ss Score
8.03
Exon sequences
Seq C1 exon
GTTTTCATACTCTGCACACCATCCTCGGGGTCCAGTGTCTCCCTTTGCATAACCTGCTGCATTGCATTGACAGTGGAGTGTTGCTTCTCACTGAAACAGCTGTCATAAGGCTCATGAAAG
Seq A exon
GTAAGAAGCCCTGAGTTTGCCAGAGTGCTAGTTCCAGCCTGAGCACCACCAAGGCTAGCTTCTTGGGTGTGCAACCTGTGCAGTCACCAAGAGCCTGGCTGCACTCAGAAGAGTGCCCTGCTCAGTTTAATGCTGCATTACATCTTGAAATTCTTAGTAGTATTTGAACGAGGGCTTGCTCGTGTTCATTTTGTGCTGAGCCCCACAAATTATACAGCTGGTCCTGTGAGCACAATCCATTCCCTGTAATCATCTTTTGGGCCAATTTAAGGTTTCTGAGCCCTTCACGAGGTCCTAAGGGACTTTTCAATCCACATACAACTATTAGATTCCTTTTCTGTGCAAGAGGGCACTTGAGGCTAGGAACCTCTGCAGGCTTGTTTCTCAAGAAAATGTCACGAAATGGCTTATTTTCAGCTGATTAACTCTGTCATCTCAAAGTTAGACTAGAAATGCAAGGAAAATTATTGAGAGGGGCAATTAAATGAATTTGAACTTTAAATTCTGTAGTATAATCACTCAAATTATTCAATTGTATTTTAAGATGATTTTTGTTTATATGAAAGCATTTGTCATTCCTCAAGGTACCTTCTGTTTTAAGTTAGTCAATAAAATTGCTTTGTACCTGGCAGCCTGTTATAGAAAAATCCCTTTTTATTCAGAGAGTCAGAGTAAAATTTCCAAAATGCTGTTAGATTAGCTTGAGAATACACAGTTGGGATATGTCCTATCAAGATGAACCACTCAAGTATTAATATTAACTTGCTAAAGTATCAAAATGGGTATTTGTTTCATTTGCTAATCTCTAACTTTCTTGTAG
Seq C2 exon
ATCTGGATAATACAGAGAAAAATGAAAAACTGAAATTCAGTATCATTGTGCGGCTTCCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088-PION:NM_017439:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=FE(57.1=100),PF041128=Mak10=PU(16.4=48.8),PF056127=DUF781=PU(23.9=53.7)
A:
NA
C2:
PF149591=GSAP-16=PD(17.1=57.1),PF041128=Mak10=FE(16.4=100),PF056127=DUF781=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCATACTCTGCACACCATCC
R:
CGGAGGAAGCCGCACAATG
Band lengths:
182-1002
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)