HsaINT0126261 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:159490582-159497271:+
Coord C1 exon
chr2:159490582-159490801
Coord A exon
chr2:159490802-159497138
Coord C2 exon
chr2:159497139-159497271
Length
6337 bp
Sequences
Splice sites
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
3' ss Seq
GCCATGTTTTTCTCATGTAGGGA
3' ss Score
9.05
Exon sequences
Seq C1 exon
TAGGTATTGGAAATCTACAAAGGACATCCAGCCAACGAAGTACCCTTACATACCAAAGAAATAATTATGCTCTGAACACAACAGCTACCTACGCGGAGCCCTACAGGCCTATACAATACCGAGTGCAAGAGTGCAATTATAACAGGCTTCAGCATGCAGTGCCGGCTGATGATGGCACCACAAGATCCCCATCAATAGACAGCATTCAGAAGGACCCCAG
Seq A exon
GCGAGTACCAGTTAGGAGTCTCTAGAAGGCTACAGTATTGCAGGAGTCAGCCAGTTCCTCCATTTTGACTTTTTTAAGTTGCTAAGTCTATTATACTATCATTATACTATCATTAATTCCATATATATTAATACTTCCAGTTGTATTCCAGCTATATAGGTCATTGAGGTTAATTTCATTTTAAAGATAGATTCCTTCTTTCCATCCTTTCATAATAAGTTAGAGAAGGCACAGATCCATGGGAATATCTGCAGCATTCATCACTGAAATATTTCATCAAGACAACAACCTGGAATAGCCTCTTGGAATTAAACAAGGCTTTGAAAGATCAATTTACCCTTTGCCCTTATCCTGACCGACTTCTTCGATAACAGCTTCAAAAAATGGATTTGGTTATTACAAACTAGAGAAAGACCCGTGTTACATGTTTTCAATCATAGTGGTCAACAATATATAACGCTGTTATTAACCAGGTCCTTTGAAAACAATTTGTGACATTTAGGAGAAGACAGTCTTTATAAGAAATTCTATCTAATAAGCAAAAAGTGTTTGGCAAATCATAGACGTTTCCTCCTTCTGATTTTATTTGGCCCTGTAGACAGCATTTTTATTAAGATAATATGAGTCATTTAATACTTGATTGATTTTGAAAAACTGACCTTGTCCTTAAAGCCATTTAAAATATTCAGGAAATAAAGATATTTTGAAACTAAAAGAATTTTCATTTCTGAAAGAGTGAAATTGTTGCTAAATTTTAAGCGCTTTAGTGTTATTTTAAGGCATGTATGCAAGATTTCATTCACTCTTCGCCCACAAATAGTTGCTTCACTGGAAAATTGTTATAATTATCAATTCATTTTTAGCAGCCTACCAACTTGTTTTAATGAATGTGAATTAAAATGATGAGTGAGGTTTTGGTCATTAAAACAAAATGACTAAAGATACCTTAAAGTTGAGTGGGAAATCCACTGCTTCACTAAAACCGCTTCACTTATTCACTTCTATTCCTGAAATTCTTTAAGCTATATAAATGCATTTGGTTCTGCTACTCCTGGTTTGCCACCTTTTTGTCATTTTTAAGGAGTTTCAAAAATAACTTGTCTAATAACACCTACAGCTTGTCAGAGATACTCTTACTGATTTTGTTTTTTCAAATCCTCAAAATGACAAAGACCTAAGGCACCCAAATAGATGCAGAAATTCCCAAAAGAGTTTTGAATTGTAGGTAATTTAGACCATCCCTTGGCTGGACCTGAAGAGAAAATAATAGCTACCTAGAAAGGCAGTGAAATGTGATGAGAACTTTGAGTTTAATATGTGTCCCTGAAGACTTCAGTTTTGACCTCTAATGTGAGTTGATTCTCTATAAACAAGGACTTCATGTATGATAATATACCTCAGCTATTCATAGTGTGATAATTTCATAGTCTAATGCATAAAACTGATGGCTGTCTTTGATTATGTGAAACTTTACTGATAATGCATTTCGTAAGGTGAATAAGTGATTATTTGGTAGGTGCATTTATTCTAGCTAAAACTGGAATTCAGGTGACTTTGAAGTTTGAATATTTAAACCAAAATTAAAAGCTCATGACAACTGTTAATTTTTAGTTTTGAAAATAGCAATTTGAAGTAATTCACTACAAGTTTTATTCACTTGTAAGCCTTTATTATTAATGCTACATTACAGTTGGCCTGAAAAATTCTCTTTAAGACTGAGGAAGTTATTGATCTTTACTGTATAAAAGGAAATCTGTGAGTTTTTTTATAGTTGTCTACTTGGAAACCATATTTATTAATAACATCAATGATGCTTCTGAAAGGAGTAACGTAAAAGACTTCCTGTGTATTCACGTTTCCATCTCAACTCATTTCCCTTTGGCCTAAAGAACTTCCTTTAGCCTTTCTTGTCTTGCATTTCTGCTTGTAACAAATTCTCTCAGCTTTAGTTTATCTGAAAATATTTCACTTGTTTTTTTAAAGGATTTTTTTTTTGCTAGATATATAATTCAGGATTTACAGGTGTGCATTTTTTTCTTTCTGTATTTTAAAAGATGTCATTCATTGTCTTCAGATCTCCGTTGTTTCTGTTGATAAGGCAGACATCATGTGCATTCTTCTCATTATGTAATGTGTCTTTTCTTTGGCTGCTTTTCAGATTTTTCTCTAGCTTTCAGCTGTTTTATTCTGGTGAGCCTAAGTATAATTTTCTTTGCATTTAACCTGCTTAGGGTTCACTGAGATTCTTGGAATGTAGGTTGATGTTTTTGTCAAAATTGGGAAATTTTCAGCCATTAATTCTTTAAGTTTTTTTTTCTGCCCCAAACTCTCTTTTCTCCTTCTAGGACTTGAATTAAACACATAGGATCACTTTATTATTTTGCAGATTACTGAATCTGTCTTCATTTTTTAAATCTTTTTTCCCTGTATTCTTGTAATCAGAAATTTTTATTAATGCCTTCAAATTTAGTGTTCTTTGTCCTATAGACTACAATCTATTGTGAAGCCCTTGCAAATTTGTTTTTATTTCCAATCCTTGAATTTGGTTCCTTTTATATATTCCATGTTCCTATGAGATTCTCCATCTCTTCACTCCTTATATACATCTTTTTCTTTAAGTCTTTGACACATTTATCATAACCATTTAAAATATTTCCTCTGATAAGTTCAACATCTGGGGTGAGTCTGGGTCTGTTTCTATTGGTTGCCTTTTTTACATATTTATAAGTCATATGTTTCTGTTTCTTCTCATGTTTAGTCATTTTAAATTATATACTGACGGTTGTAGATGATACATTATAGGGAATCTGGATTAAGTTGTCTCCTGTTAGGGTGCTGAGTTTTGTTGTGGCAGAGAACTAAATTACTGGCAGATCCTTTCAATCCCATCAAGATTGGTTTTGTTCATTGTTAGGTCTAGTTCATATTTCTTTTAAGCCTTAGAACATGATCCTTACCCCTAAAACTTGGCCTTTGTGGAGTCTTGACTAAATTCCCAAGGTGTTCAGTGAGGTCTGCACTCTGACTAGGCTGGGAGTCCACATCACGTGGTACCTGTTCAGCCTTGAGCCGTGCAGCAGCCACTTTCCACCAGACCTGTGCATGTGCCCTACAGCTCAGGGTACAACTAAGGACTTCGGATAGTCCACACGCAAACCCGGAGAATCACCTCTGCTTAGCTCCCTTGTCTCCAGTACTCTGCCTTGCACATTCTAACCACTTTGGCACCCACAAATTCCACTCGCTCCCTGCCTCAGCTCACTAAATCCCTCACATACTACTTGGCCTCAGCTTCCTGTGTCTTGGTCCAGAAAGTGCCCTCAGGCAGAAAGCCAAGTAAACATGGGACTCGTGGATGTTTCCCTCCTCTCAAGGATTATATTCTTGTGTTGCCTGTTTTCGAGGGTCTAAAAACAGTTTTCTCCTACATTTAGCTAAATTCACTTTTATAATTGTTTATGGTGGGAGGGCGAAATCCAGTACGAGTTACTCTATCATGGCTGGAAACAGAAGTCTGGGCTTAGGTTATACTGAAGCAAATCCTGGCAGGCATTGATGCCATCCAGCCAGCCTACAAATTGATAGCAGTTTTTCGAGGGTAAATTTCTACTGAATTTTCATCGAGGTTGGAGTTGAAGCCAAGCAAGCCTAATTGCCCAGCTCTGGCAGGAGCCCACCCTCGGGGCTGTCTGGCCCTCATGGCACCGGGGATGTCAGGAAATCTTGACCCTCAGTGTCCCATTTAAAGAGGACAAAAATGTGTATTTGTAATGATTGTGAGTCATCAAAGAAAGAGTAAATCACACTCCTTGCACTCTGTTAATTACAACAGAGATTTACATAATAGGCTTTAGACAGATTTTCTGAGAAACGATTGATAACAGTTTCAATATATAAAAGGAAAACTATTTGTTACCAGGAATTCATCTATTTAGAATAGCTCATTTTTTAGGGATGATGAATATTAATAAAACATCTGTGTCAGAAGTAAAAGTATATAAAATATTTTAGTATTCATCATCATATTTAATCATCACAACCAACCAGTGAAGATTGAAATATTAGTTTCATTGATCTTGTTTTACAGTTGAGGAAACTGAAGCTCCAAATAATTAATTGGTTTTCAAAATCACACAGAAATGGAAGGACCCAAGACTGAAACCCAGGCAATCTAACTCCATATTCTGTGCTTTTTCTGCTGTTATCCTGCCTCCCTTGGCATTTGCTGTATTCTTAATGGCTGTTAGTGACATCACCCTCCAGCCTGTTCACCAAGCCAGAAACTCCATCTCACACCTGACTTCAGTTTTTAGATCATCTGGCTGCTGTATAAAGAATGGATTGGGGGTGCAGGTGGGGTGAGGGGATAATATTAGAAGCAGAGAGAACATGTAGGAAACTGTTAGACTCTTCTGGGCAAAATGGAGAAAATGAATGGATTTGGTATATGTTAAATATTTTGTAGATAGTCAACAGAACTTGCTGATGGATTCCATGAGGGAAGATGAAGAAAAGAGAGGAATCAAAGAGAAGTCTATTTCGTTTCAAGCAGATGTATAGATTCCTGTGCAGATAGTGGGTAATCTGCATGACACCCATCTTTTTGTATTCTAGGGCATTCTTTCCTTGGCCACTAGAGTTATCGTCTGTATAAATGTGACTATGTCACATCCTCTTACTCTCCTGCTTCACAGCCTTCATTCCTTATGTGTAGGCACACATATAGACCACCTGGGTTTCACTAACCTCTATCACTAATTACTAATCCTGAGTTCCTTATCTGTATCTAATGTTATTTTAATAGTGCTTACCTCATGAGGCAACAGTAAAGGTAAATGAGATAATGAAGGTAAAGTTCTTGGCACAAAGCCTGATATAAGTAAACTCAATAAAGGATAACTCCTGTTATTGGTATTAAGACTAAACTTTTTAGTTTGGCAGAGAAGACCCTGTAAATAGAATCGTATCTTACCAATATTTGTATCTCCAGCACCATAGCACAGTAAGAATTCACTAACTGAACGCATGAGGGGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTGTGTTTGCGTGTGTGCACACAGGTGTGGGATGACATGCCCCTTTGCAGGGGTCTAACAAGTTAATACATGGAGACTTCCCAGATCAAGAGAGACTCTAAGGCTTCAAAAACCAGGCAGGAGAATTATCACTCGGTCATTAATTTTAAAGATAATTTTAAAGGTTTACTCAGTATGAATTCTTTTTTTTAATAAACAACTAACTTTATCCTGTAATCAGAGTCTGCATATTTGTTGTTCTGTGAACCATTTTCTAACAATCTGCTTTTCACATAATATAAGCACAAACTCACATTTAACAAGAATTCCAAACAGTACACCAATCAGATGACATTAGAAAATCCTGAAAATGGATGTTAGCTGAAAAAAAGGAAAGTATAAAAGTATATATACATAGCATGATTATGTATTCATTGTTCAAAAAAATGGTATAGCATAGTGTTGGAGGGCACAGACTCTGAAGGCAGGGTACCGCTTCGCAGTTTACAGCCACGTGGCCAGGCGCATGGCCTTTCTGCCTCAACTTCCGTTTCTCTAAGGTTGCCGTAAGAATAAATTAATAAATATATATAAAATGCCTGGAATAGTGCCTGACACAGGATAGGGGTTTATGAAATATTAACTACTATTTAATAATAACCCAGTTTTATGGAAAAAATTCCAAACTCACACATGTGTGCACATTTGCACACATATATAGAAAAACAGGAAATGTCAGCAGTAATCCTGAATATAGGATGACTGGTCAAATACTTGTTTATAGTTTTCTGTGTTTCTGTGTTATACTCAAGAGCAACCATAAACATTGTTTCTTAAAAATCCTCAGGCCCACAATGTTTGTGATTTCTAGGCTGACGCCAGCCCTGTCTGTTCCCACCAGCCCTTCCTCTCCCTTCAGGCATGACATCTCACTTCGCTACAGTGCACGTGTTTACCTGAGCCTTGCACCTGCAGATTTCTTACATAGGTAGAAAGACATAAAATTAGAATCAGGAGGAGGAACACGAGAGTGGAAGTTACTTATATTAAGAATTTTCTTTGTTCCCCTGAATCTCTTTCTGTGCATCTGTGCGTCATGATTTCCTTAAGATCATAAGCATCTGGGCCTCTGCATATGTTCATCAGGGGGAAAAATTATTTAGGTATGTATTTTTTAGGATTTTTGTAACTTCCCATTTTTGTCTCAGCTGAGCTTTTTTTCCTTATACCAAGTGTTTTTTTCAGTGTATTTTTACAACATGGGCCTTCCTTTCTGAAGCCATGTTTTTCTCATGTAG
Seq C2 exon
GGAGTTTGCCTGGCGTGATCCTGAGTTGCCTGAGGTCATTCACATGCTTCAGCACCAGTTCCCATCTGTTCAGGCAAATGCAGCGGCCTACCTGCAGCACCTGTGCTTTGGTGACAACAAAGTGAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
-PKP4:NM_001005476:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)