HsaINT0128797 @ hg38
Intron Retention
Gene
ENSG00000143442 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr1:151407235-151408240:-
Coord C1 exon
chr1:151408100-151408240
Coord A exon
chr1:151407292-151408099
Coord C2 exon
chr1:151407235-151407291
Length
808 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CACTTCTTTGTCTTTCTCAGCAA
3' ss Score
8.15
Exon sequences
Seq C1 exon
GAGTGTCATGGGCCGGCAGACATGCCTGGAGTGCAGCTTCGAGATCCCAGACTTCCCTAATCATTTCCCTACTTACGTACACTGCTCTCTGTGTCGCTATAGCACCTGCTGTTCTCGAGCTTATGCCAACCACATGATCAA
Seq A exon
GTAAGTTGGTTTTTAACCAGTGTTTTAGCTTGAGAGTTCAGATTCTTTTTTTCTTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTTGAAGACAGGGTCTCACTCTGTCCCCTAGGCTGGAGTGCAATAGCATGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTCCTGTCTCAGCCTCCCAAGTAGCTGGGATTATAGGTGTGCACCACCATGCCTGGCTGATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCTTGTTGGCCAGGCTGGTCTCAAACTCCTGAGCTCAGGTGATCCACCTGCCTCGGCCTCCCTAAAGTGCTGGGATTACAGACATGAGCCACTGCGCCCGGCCCCAGCCAGATTCTTGAGCACTCATTTCATTTTCTCCCCTGCTTCTAATATGTTTCCTCCTTCAACTCTTAGAGCTATTTGTTCTTCTCTCCTAGCAGAGTGAGAGGCTCTGTTTTTTCGGTTTTGATGGTCTGTGCTCTAATTTCATAGGGCCTTGCTATTCAAGTACCAGTAGTATTAGGTGGGAGCTTGTTAGAAATGCTGACTCTCAGCCCCGCCCTAGGCCTACTGAACCAGAATGTGAATTTTAATAGATCCTCAGTGACTTGTATGCATATTAAAGTTTAAGAAGCATGGTGACAGGAAAACTGGCTTAGGTTGAGATTAGGGTGCACTGAAGAAGTGTCTCTTTTGTTGGGGGCATTGTCACTGGCTGGTGATCTCTAGCTTAGCCAGCAGAACTCCGTAACTCATACCACTTCTTTGTCTTTCTCAG
Seq C2 exon
CAATCATGTTCCACGGAAGAGCCCCAAGTATTTGGCTTTGTTTAAAAATTCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143442:ENST00000271715:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTCATGGGCCGGCA
R:
CTCACAGAATTTTTAAACAAAGCCA
Band lengths:
198-1006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development