MmuINT0123383 @ mm10
Intron Retention
Gene
ENSMUSG00000038902 | Pogz
Description
pogo transposable element with ZNF domain [Source:MGI Symbol;Acc:MGI:2442117]
Coordinates
chr3:94877236-94877987:+
Coord C1 exon
chr3:94877236-94877376
Coord A exon
chr3:94877377-94877930
Coord C2 exon
chr3:94877931-94877987
Length
554 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TGCTTCTTTGTCTTTCTCAGCAA
3' ss Score
8.74
Exon sequences
Seq C1 exon
GAGCGTCATGGGCCGGCAGACATGTCTGGAGTGCAGCTTTGAGATTCCAGATTTTCCTAATCATTTCCCTACCTATGTGCATTGTTCTCTCTGCCGATACAGCACCTGCTGCTCTAGAGCTTATGCCAATCACATGATCAA
Seq A exon
GTAAGTCATGAGAAACCAGGATTTCTAGCTTGGAGTCCAAAACTTATTTAATCCCCTCCCATTTCTATTTTGTTTTTTTCTTCAACTTTAAAGCTGTGTGTCCATCTCTTCTCGGAAGGTAAAAGAACAAACCATATTGAGTCAGCTCTGTTAGTCTGCTCTACATAATCCCCTAGGGTCTCCCTACTGCAAGTGTAGCCCGAGCATTGGATGGGAGCTTGTTAGAAATGCTAATCCTTTTTTTTTATATTTTTAATTCTCATATATTACATCCCAACAGCAGTTTCCCCTCCCCCTTGTATTTTTCCCCCAGCCTCCCCTCCACCCCATATCCACACTCCCTCCACTTCACCTTAGAAAAGAGCAGGCCTCTCAGTGACATCATTTTTATCTAGGCCTGAATTAAAATGTGAATTGTAATTGATCCTCCAGTTATTTTGTGCTTATATTGAAGTTTGAGAAGCCTGATGGTCAAACTGGTGTGGATTGTGAAGGTATCTCTTTGGCTGGACATTGTCATTGGTTGTAACTCTCTGCTTCTTTGTCTTTCTCAG
Seq C2 exon
CAATCATGTTCCACGGAAAAGTCCCAAGTATTTGGCTTTGTTTAAAAATTCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038902:ENSMUST00000107270:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types