HsaINT0131707 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr20:62192435-62192819:-
Coord C1 exon
chr20:62192703-62192819
Coord A exon
chr20:62192628-62192702
Coord C2 exon
chr20:62192435-62192627
Length
75 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
ACAAGCAGTGTCCCCGGCAGGTA
3' ss Score
4.04
Exon sequences
Seq C1 exon
GAGCATCACCCTGCACCACCGGATCCGGCAGGCCCCCAACCCTTACTCGTCGGAAATCAAGGCCTTTGACACCCGGCTGCAGAGAGGGGAGCTCTTCTCCAGGGAGGACCTGGTCTG
Seq A exon
GTAAGTGGCAGGGGCCAGGGGGTGGAGCTGCCTGCAGCATGGGGGCCCTGGGGTGACAAGCAGTGTCCCCGGCAG
Seq C2 exon
GTACAAGAAGGTCTTGTGGGAGGCTCGGAAGTTCGAGCTGGACCGGCATGAGGTCATCCTCTGCACCTGCTCCTGTGCAGCCTCTGCCAGCCTCAAAATCCTGGACGTGAGGCAGATCCTTGTTGACGAGGCAGGCATGGCCACGGAACCTGAAACCCTCATCCCCCTGGTGCAGTTCCCACAGGCCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
-PRIC285:NM_033405:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTCGGAAATCAAGGCCTT
R:
CGTCCAGGATTTTGAGGCTGG
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)