RnoINT0070097 @ rn6
Intron Retention
Gene
ENSRNOG00000013267 | Helz2
Description
helicase with zinc finger 2 [Source:RGD Symbol;Acc:1306056]
Coordinates
chr3:176732432-176732816:-
Coord C1 exon
chr3:176732700-176732816
Coord A exon
chr3:176732510-176732699
Coord C2 exon
chr3:176732432-176732509
Length
190 bp
Sequences
Splice sites
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
3' ss Seq
AAGCTCTCAATGTTCGACAGATC
3' ss Score
4.93
Exon sequences
Seq C1 exon
GAGTATTACCCTTCACCACCGGATCCGCCAGGCCCCCAACCCGTATGCAGCAGAGATCAGAAAATTCGATGCCCAGCTTCGGGAAGGGAAAATATTCTCAAAAGATGATCTTTTGGT
Seq A exon
GTAAGTGGTGGTCTTGTAGGTGGGGCTACCCATTGGCAAGCTCACTGGATGACACGAATTGCCTACCTTGTATAGATACAGGAGAGTCTTGGGGAAGGCACGCAAATATGAGCTCGAGCGGCACTCAGTCATCCTGTGCACATGCTCCTGTGCAGCATCAGGAAGCCTGAAAGCTCTCAATGTTCGACAG
Seq C2 exon
ATCCTTATTGACGAGGCAGGCATGGCCACTGAGCCAGAAACCCTTATTCCGTTGGTGTGCTTCTCAAAGACCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013267:ENSRNOT00000017787:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(21.0=100)
A:
NA
C2:
PF130861=AAA_11=PD(9.7=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTATTACCCTTCACCACCGG
R:
TTCTCGGTCTTTGAGAAGCACAC
Band lengths:
194-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]