RnoEX0041519 @ rn6
Exon Skipping
Gene
ENSRNOG00000013267 | Helz2
Description
helicase with zinc finger 2 [Source:RGD Symbol;Acc:1306056]
Coordinates
chr3:176732193-176732816:-
Coord C1 exon
chr3:176732700-176732816
Coord A exon
chr3:176732432-176732624
Coord C2 exon
chr3:176732193-176732284
Length
193 bp
Sequences
Splice sites
3' ss Seq
GAATTGCCTACCTTGTATAGATA
3' ss Score
3.67
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGTATTACCCTTCACCACCGGATCCGCCAGGCCCCCAACCCGTATGCAGCAGAGATCAGAAAATTCGATGCCCAGCTTCGGGAAGGGAAAATATTCTCAAAAGATGATCTTTTGGT
Seq A exon
ATACAGGAGAGTCTTGGGGAAGGCACGCAAATATGAGCTCGAGCGGCACTCAGTCATCCTGTGCACATGCTCCTGTGCAGCATCAGGAAGCCTGAAAGCTCTCAATGTTCGACAGATCCTTATTGACGAGGCAGGCATGGCCACTGAGCCAGAAACCCTTATTCCGTTGGTGTGCTTCTCAAAGACCGAGAAG
Seq C2 exon
GTGGTTCTGCTGGGAGACCACAAGCAGCTTCGGCCTGTGGTCAAGAACGAACAGCTGCGAAACCTGGGGATGGACCGGTCACTCTTTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013267_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(21.0=100)
A:
PF130861=AAA_11=PD(9.7=66.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCCTTCACCACCGGATCC
R:
TCTCAAAGAGTGACCGGTCCA
Band lengths:
203-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]