RnoINT0070098 @ rn6
Intron Retention
Gene
ENSRNOG00000013267 | Helz2
Description
helicase with zinc finger 2 [Source:RGD Symbol;Acc:1306056]
Coordinates
chr3:176732193-176732509:-
Coord C1 exon
chr3:176732432-176732509
Coord A exon
chr3:176732285-176732431
Coord C2 exon
chr3:176732193-176732284
Length
147 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATAACTATCTTTGCATCCAGGTG
3' ss Score
8.5
Exon sequences
Seq C1 exon
ATCCTTATTGACGAGGCAGGCATGGCCACTGAGCCAGAAACCCTTATTCCGTTGGTGTGCTTCTCAAAGACCGAGAAG
Seq A exon
GTGAGGGTTGTGGGGATCTAGTGCTCCCGCCTGGATTCCTGGGGGCAGCTGATGCCGGGATGCTAAGTGTGAGCATTAAAGATGGCCAAGAAGTTGGGATGCTTCTGGCTCCAAAGCTGTCAAGGTCATAACTATCTTTGCATCCAG
Seq C2 exon
GTGGTTCTGCTGGGAGACCACAAGCAGCTTCGGCCTGTGGTCAAGAACGAACAGCTGCGAAACCTGGGGATGGACCGGTCACTCTTTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013267:ENSRNOT00000017787:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(9.7=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTATTGACGAGGCAGGC
R:
CTCTCAAAGAGTGACCGGTCC
Band lengths:
170-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]